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GUIdock-VNC: using a graphical desktop sharing system to provide a browser-based interface for containerized

Varun Mittal, Ling-Hong Hung, Jayant Keswani

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    Summary
    This summary is machine-generated.

    GUIdock-VNC enables graphical interfaces for Dockerized bioinformatics tools via a browser. This container technology simplifies complex software deployment and accessibility for researchers, minimizing overhead across platforms.

    Keywords:
    Dockerbioinformaticscontainersgraphical user interfaceresearch reproducibilitysoftware

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    Area of Science:

    • Bioinformatics
    • Computational Biology
    • Software Engineering

    Background:

    • Docker container technology facilitates the packaging and distribution of complex bioinformatics workflows.
    • Traditional Docker usage is command-line based, posing challenges for bioinformatics pipelines requiring graphical user interfaces (GUIs).

    Purpose of the Study:

    • To develop a novel container tool, GUIdock-VNC, that provides a browser-based graphical interface for containerized bioinformatics software.
    • To enable any Docker package to be run with a graphical desktop interface accessible through a web browser.

    Main Methods:

    • Implemented GUIdock-VNC utilizing the Virtual Network Computing (VNC) protocol for browser-based graphical rendering.
    • Developed a minimal image builder to integrate the VNC system into existing Docker packages.
    • Integrated Oauth2 authentication protocols for secure cloud deployment.

    Main Results:

    • Demonstrated the utility of GUIdock-VNC through a proof-of-concept in gene network inference.
    • Validated the container implementation across various operating systems.
    • Showcased that the GUIdock-VNC solution introduces minimal performance overhead.

    Conclusions:

    • GUIdock-VNC effectively bridges the gap between command-line containerization and the need for graphical interfaces in bioinformatics.
    • The developed tool offers a versatile and efficient solution for running containerized bioinformatics software with GUIs, applicable across diverse operating systems and cloud environments.