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Depending upon the different spatial orientation of the substituents, the disubstituted cycloalkanes exhibit two types of stereoisomers. The cis isomers have the substituents on the same side of the ring, whereas the trans isomers have the substituents on the opposite sides. These stereoisomers exhibit different physical properties and cannot be interconverted without breaking the carbon-carbon bonds.
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In this lesson, we delve into the role of ring conformation and its stability, which determines the spatial arrangement and, consequently, the molecular symmetry and stereoisomerism of cyclic compounds. 1,2-Dimethylcyclohexane is used as a case study to evaluate the possible number of stereoisomers. Here, given the multiple (n = 2) chiral centers, there are 2n = 4 possible configurations that lack a plane of symmetry, as the ring skeleton exists in a non-planar chair conformation. In addition,...
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Electrocyclic reactions are reversible reactions. They involve an intramolecular cyclization or ring-opening of a conjugated polyene. Shown below are two examples of electrocyclic reactions. In the first reaction, the formation of the cyclic product is favored. In contrast, in the second reaction, ring-opening is favored due to the high ring strain associated with cyclobutene formation.
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The stereochemistry of electrocyclic reactions is strongly influenced by the orbital symmetry of the polyene HOMO. Under thermal conditions, the reaction proceeds via the ground-state HOMO.
Selection Rules: Thermal Activation
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The absorption of UV–visible light by conjugated systems causes the promotion of an electron from the ground state to the excited state. Consequently, photochemical electrocyclic reactions proceed via the excited-state HOMO rather than the ground-state HOMO. Since the ground- and excited-state HOMOs have different symmetries, the stereochemical outcome of electrocyclic reactions depends on the mode of activation; i.e., thermal or photochemical.
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The Diels–Alder reaction is one of the robust methods for synthesizing unsaturated six-membered rings. The reaction involves a concerted cyclic movement of six π electrons: four π electrons from the diene and two π electrons from the dienophile.
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cis or trans with class II diterpene cyclases.

Meirong Jia1, Reuben J Peters

  • 1Roy J. Carver Department of Biochemistry, Biophysics & Molecular Biology, Iowa State University, Ames, IA 50010, USA. rjpeters@iastate.edu.

Organic & Biomolecular Chemistry
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Summary

Isoprenoid cyclization can produce decalin bicycles regardless of alkene configuration. Class II diterpene cyclases accept both (E,E,E)- and (Z,Z,Z)-diphosphates, yielding distinct decalin products.

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Area of Science:

  • Organic Chemistry
  • Biochemistry
  • Enzymology

Background:

  • Isoprenoids are versatile natural products that undergo electrophilic cyclization.
  • The stereochemical outcome of isoprenoid cyclization is often dictated by substrate configuration.
  • Class II diterpene cyclases typically synthesize (E,E,E)-geranylgeranyl diphosphate derived products.

Purpose of the Study:

  • To investigate the substrate specificity of class II diterpene cyclases.
  • To determine if alkene configuration influences the cyclization of isoprenoid precursors.
  • To explore the synthesis of novel decalin bicycles.

Main Methods:

  • Enzymatic assays using class II diterpene cyclases.
  • Synthesis and characterization of (E,E,E)-geranylgeranyl diphosphate and (Z,Z,Z)-nerylneryl diphosphate.
  • Analysis of cyclization products using NMR spectroscopy.

Main Results:

  • Class II diterpene cyclases accepted both (E,E,E)-geranylgeranyl diphosphate and (Z,Z,Z)-nerylneryl diphosphate.
  • Cyclization of (E,E,E)-geranylgeranyl diphosphate yielded the expected 13E-trans-decalin bicycles.
  • Cyclization of (Z,Z,Z)-nerylneryl diphosphate produced novel 13Z-cis-decalin bicycles.

Conclusions:

  • The stereochemical configuration of the isoprenoid precursor does not prevent cyclization by class II diterpene cyclases.
  • Class II diterpene cyclases can produce distinct decalin bicycle stereoisomers based on substrate configuration.
  • This expands the scope of enzymatic isoprenoid cyclization for generating molecular diversity.