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Heuristic Mining of Hierarchical Genotypes and Accessory Genome Loci in Bacterial Populations
Published on: December 7, 2021
A phylogenomic framework for assessing the global emergence and evolution of clonal complex 398 methicillin-resistant
Anders Gonçalves da Silva1,2, Sarah L Baines1, Glen P Carter1
11Doherty Applied Microbial Genomics, Department of Microbiology & Immunology, The University of Melbourne at The Doherty Institute for Infection and Immunity, Melbourne, Australia.
Abstract:
Distinct clones of methicillin-resistant Staphylococcus aureus (MRSA) have emerged as important causes of infection in individuals who have exposure to livestock (livestock-associated MRSA; LA-MRSA). Clonal complex 398 (CC398) is the most prevalent LA-MRSA clone, and has been reported from several geographical settings, including Europe, the Americas and Asia. To understand the factors contributing to the global dissemination of this clone, we analysed CC398 MRSA isolates from New Zealand (NZ), a geographically isolated country with an economy strongly dependent on livestock farming. We supplemented the NZ CC398 MRSA collection with global datasets of CC398 MRSA and CC398 methicillin-susceptible S. aureus. Here, we demonstrate multiple sporadic incursions of CC398 MRSA into NZ, as well as recent importation and spread of a swine-associated clade related to the European LA-MRSA lineage. Within a larger global phylogenomic framework, Bayesian modelling suggested that this NZ clade emerged in the late 2000s, with a probable origin in swine from Western Europe. Elucidating the factors responsible for the incursion and spread of LA-MRSA in geographically distant regions, such as NZ, provides important insights into global pathways of S. aureus transmission, and will inform strategies to control importation and spread.
Insights
Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) CC398 has spread globally. This study tracked LA-MRSA CC398 incursions into New Zealand, revealing a recent swine-associated clade likely originating from Europe.
Area of Science:
- Microbiology
- Genomics
- Epidemiology
Background:
- Livestock-associated methicillin-resistant Staphylococcus aureus (LA-MRSA) is a significant cause of infection in individuals with livestock exposure.
- Clonal complex 398 (CC398) is the most common LA-MRSA clone globally, found in Europe, the Americas, and Asia.
- Understanding LA-MRSA CC398 dissemination is crucial for infection control.
Purpose of the Study:
- To investigate the factors contributing to the global spread of LA-MRSA CC398.
- To analyze CC398 MRSA isolates from New Zealand (NZ) and global datasets.
- To understand the origins and spread of LA-MRSA in geographically isolated regions.
Main Methods:
- Phylogenomic analysis of CC398 MRSA isolates from New Zealand and global datasets.
- Comparison with methicillin-susceptible Staphylococcus aureus CC398.
- Bayesian modeling to infer clade emergence and origin.
Main Results:
- Multiple sporadic introductions of CC398 MRSA into New Zealand were identified.
- A recent swine-associated clade, linked to European LA-MRSA, was imported and spread within NZ.
- Bayesian modeling indicated this NZ clade emerged in the late 2000s, likely from European swine.
Conclusions:
- The study elucidates the pathways of LA-MRSA CC398 incursion and spread into geographically isolated regions like New Zealand.
- Findings provide insights into global Staphylococcus aureus transmission dynamics.
- This research will inform strategies for controlling the importation and spread of LA-MRSA.
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