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Updated: Mar 5, 2026

Extracting Modified Microtubules from Mammalian Cells to Study Microtubule-Protein Complexes by Cryo-Electron Microscopy
Published on: March 3, 2023
Structural Insights of WHAMM's Interaction with Microtubules by Cryo-EM
Tianyang Liu1, Anbang Dai1, Yong Cao2
1Ministry of Education Key Laboratory of Protein Sciences, Tsinghua-Peking Joint Center for Life Sciences, Beijing Advanced Innovation Center for Structural Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Abstract:
WASP homolog associated with actin, membranes, and microtubules (WHAMM) is a vertebrate protein functioning in membrane tubulation for intracellular membrane trafficking and specific organelle formation. Composed of multiple domains, WHAMM can bind to membrane and microtubule (MT) and promote actin polymerization nucleation. Previous work revealed that WHAMM's activity to promote actin nucleation is repressed upon binding to MTs. Here, we discovered that WHAMM interacts with αβ-tubulin through a small peptide motif within its MT-binding domain. We reconstructed a high-resolution structure of WHAMM's MT-binding motif (MBM) assembling around MTs using cryo-electron microscopy and verified it with chemical cross-linking and mass spectrometry analysis. We also detected a conformational switch of this motif between the non-MT-bound state and the MT-bound state. These discoveries provide new insights into the mechanism by which WHAMM coordinates actin and MT networks, the two major cytoskeletal systems involved in membrane trafficking and membrane remodeling.
Insights
WHAMM protein binds microtubules via a specific motif, regulating actin polymerization for membrane trafficking. This study reveals WHAMM
Area of Science:
- Cell Biology
- Molecular Biology
- Biophysics
Background:
- WHAMM protein regulates membrane tubulation and intracellular trafficking.
- WHAMM binds membranes and microtubules (MTs), nucleating actin polymerization.
- MT binding represses WHAMM's actin nucleation activity.
Purpose of the Study:
- To elucidate the mechanism of WHAMM interaction with microtubules.
- To understand how WHAMM coordinates actin and MT networks.
Main Methods:
- Cryo-electron microscopy to determine WHAMM MT-binding motif (MBM) structure.
- Chemical cross-linking and mass spectrometry to verify interactions.
- Analysis of conformational changes in WHAMM upon MT binding.
Main Results:
- WHAMM interacts with αβ-tubulin via a peptide motif in its MT-binding domain.
- High-resolution structure of WHAMM's MBM assembled on MTs was reconstructed.
- A conformational switch of the MBM between MT-bound and non-bound states was identified.
Conclusions:
- WHAMM utilizes a specific motif to bind MTs, influencing its actin nucleation activity.
- Structural and biochemical data reveal WHAMM's mechanism for coordinating cytoskeletal networks.
- These findings offer insights into membrane trafficking and remodeling regulation.
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