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Updated: Mar 5, 2026

Deciphering the Structural Effects of Activating EGFR Somatic Mutations with Molecular Dynamics Simulation
Published on: May 20, 2020
Tyrosine kinase domain mutations of EGFR gene in head and neck squamous cell carcinoma
Chittibabu Vatte1, Ali M Al Amri2, Cyril Cyrus1
1Department of Genetic Research, Institute for Research and Medical Consultation, University of Dammam, Dammam.
Background:
Epidermal growth factor receptor (EGFR) is a commonly altered gene that is identified in various cancers, including head and neck squamous cell carcinoma (HNSCC). Therefore, EGFR is a promising molecular marker targeted by monoclonal antibodies and small molecule inhibitors targeting the tyrosine kinase (TK) domain.
Objective:
The objective of this study was to investigate the spectrum of mutations in exons 18, 19, 20, and 21 of the EGFR gene in HNSCC patients.
Materials And Methods:
This retrospective study included 47 confirmed HNSCC cases. Mutations in the TK domain, exons 18, 19, 20, and 21 of the EGFR gene, were detected by Scorpion® chemistry and ARMS® technologies on Rotor-Gene Q real-time polymerase chain reaction.
Results:
The tumors exhibited EGFR-TK domain mutations in 57% of cases. Four cases of T790M mutations were reported for the first time among HNSCC patients. Out of the total mutations, L861Q (exon 21), exon 20 insertions and deletions of exon 19 accounted for the majority of mutations (21%, 19%, and 17%, respectively). EGFR mutation status was correlated with the higher grade (P=0.026) and advanced stage (P=0.034) of HNSCC tumors.
Conclusion:
Higher frequency of EGFR-TK domain mutations together with the presence of the T790M mutation suggests that identification of these mutations might streamline the therapy and provide a better prognosis in HNSCC cases.
Insights
Epidermal growth factor receptor (EGFR) mutations are common in head and neck squamous cell carcinoma (HNSCC). This study found EGFR-TK domain mutations in 57% of HNSCC cases, including novel T790M mutations, correlating with advanced disease.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- Epidermal growth factor receptor (EGFR) is frequently altered in cancers like head and neck squamous cell carcinoma (HNSCC).
- EGFR serves as a key molecular target for cancer therapies, including monoclonal antibodies and tyrosine kinase (TK) inhibitors.
Purpose of the Study:
- To investigate the spectrum of mutations within exons 18, 19, 20, and 21 of the EGFR gene in HNSCC patients.
- To identify specific EGFR mutations and their prevalence in the HNSCC cohort.
Main Methods:
- Retrospective analysis of 47 confirmed HNSCC cases.
- Detection of EGFR TK domain mutations (exons 18-21) using Scorpion® chemistry and ARMS® technologies via real-time polymerase chain reaction (Rotor-Gene Q).
Main Results:
- EGFR-TK domain mutations were identified in 57% of HNSCC tumors.
- The study reported four cases of T790M mutations, a novel finding in HNSCC.
- Predominant mutations included L861Q (exon 21, 21%), exon 20 insertions (19%), and exon 19 deletions (17%).
- EGFR mutation status significantly correlated with higher tumor grade (P=0.026) and advanced stage (P=0.034).
Conclusions:
- The high frequency of EGFR-TK domain mutations, including the T790M variant, in HNSCC suggests potential therapeutic implications.
- Identifying these mutations may help optimize treatment strategies and improve patient prognosis in HNSCC.
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