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Updated: Aug 14, 2026

Chromatin Immunoprecipitation (ChIP) of Histone Modifications from Saccharomyces cerevisiae
Published on: December 29, 2017
Histone deacetylases: revealing the molecular base of dimorphism in pathogenic fungi
Alberto Elías-Villalobos1, Dominique Helmlinger2, José I Ibeas3
1Centro Andaluz de Biología del Desarrollo (CABD), Universidad Pablo de Olavide -Consejo Superior de Investigaciones Científicas-Junta de Andalucía, ES-41013 Seville, Spain. ; Centre de Recherche de Biochimie Macromoléculaire, Centre National de la Recherche Scientifique UMR5237-Université de Montpellier, Montpellier, France.
Abstract:
Fungi, as every living organism, interact with the external world and have to adapt to its fluctuations. For pathogenic fungi, such interaction involves adapting to the hostile environment of their host. Survival depends on the capacity of fungi to detect and respond to external stimuli, which is achieved through a tight and efficient genetic control. Chromatin modifications represent a well-known layer of regulation that controls gene expression in response to environmental signals. However, less is known about the chromatin modifications that are involved in fungal virulence and the specific cues and signalling pathways that target chromatin modifications to specific genes. In a recently published study, our research group identified one such regulatory pathway. We demonstrated that the histone deacetylase (HDAC) Hos2 is involved in yeast-to-hyphal transition (dimorphism) and it is associated with the virulence of the maize pathogen Ustilago maydis, the causative agent of smut disease in corn. Hos2 activates mating-type genes by directly binding to their gene bodies. Furthermore, Hos2 acts downstream of the nutrient-sensing cyclic AMP-Protein Kinase A pathway. We also found that another HDAC, Clr3, contributes to this regulation, possibly in cooperation with Hos2. As a whole, our data suggest that there is a direct link between changes in the environment and acetylation of nucleosomes within certain genes. We propose that histone acetylation is critical to the proper timing and induction of transcription of the genes encoding factors that coordinate changes in morphology with pathogenesis.
Insights
Histone deacetylase Hos2 regulates fungal virulence and dimorphism in Ustilago maydis by controlling mating-type genes. This epigenetic regulation links environmental signals to gene expression, impacting pathogenesis.
Area of Science:
- Molecular Biology
- Epigenetics
- Mycology
Background:
- Pathogenic fungi must adapt to host environments, relying on genetic control and chromatin modifications for survival.
- Understanding chromatin regulation in fungal virulence and specific signaling pathways targeting gene expression is crucial.
Purpose of the Study:
- To identify chromatin modifications regulating virulence in the maize pathogen Ustilago maydis.
- To elucidate the role of histone deacetylase (HDAC) Hos2 in fungal dimorphism and pathogenesis.
Main Methods:
- Investigated the function of HDAC Hos2 in Ustilago maydis.
- Analyzed the association of Hos2 with mating-type genes and its regulation by the cyclic AMP-Protein Kinase A pathway.
- Examined the contribution of HDAC Clr3 to the regulatory pathway.
Main Results:
- The histone deacetylase Hos2 is essential for yeast-to-hyphal transition (dimorphism) and virulence in Ustilago maydis.
- Hos2 directly activates mating-type genes by binding to their gene bodies, downstream of the cyclic AMP-Protein Kinase A pathway.
- The HDAC Clr3 also contributes to this epigenetic regulation, potentially collaborating with Hos2.
Conclusions:
- Environmental signals directly influence nucleosome acetylation within specific genes in Ustilago maydis.
- Histone acetylation is critical for the precise regulation of gene transcription involved in fungal morphology and pathogenesis.
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