Jove
Visualize
Contact Us
JoVE
x logofacebook logolinkedin logoyoutube logo
ABOUT JoVE
OverviewLeadershipBlogJoVE Help Center
AUTHORS
Publishing ProcessEditorial BoardScope & PoliciesPeer ReviewFAQSubmit
LIBRARIANS
TestimonialsSubscriptionsAccessResourcesLibrary Advisory BoardFAQ
RESEARCH
JoVE JournalMethods CollectionsJoVE Encyclopedia of ExperimentsArchive
EDUCATION
JoVE CoreJoVE BusinessJoVE Science EducationJoVE Lab ManualFaculty Resource CenterFaculty Site
Terms & Conditions of Use
Privacy Policy
Policies

Related Experiment Videos

Aozan: an automated post-sequencing data-processing pipeline.

Sandrine Perrin1, Cyril Firmo1, Sophie Lemoine1

  • 1École Normale Supérieure, PSL Research University, CNRS, Inserm, Institut de Biologie de l'École Normale Supérieure (IBENS), Plateforme Génomique, Paris, France.

Bioinformatics (Oxford, England)
|April 4, 2017
PubMed
Summary
This summary is machine-generated.

Related Concept Videos

You might also read

Related Articles

Articles linked to this work by shared authors, journal, and citation graph.

Sort by
Same author

A systematic scoring system to optimise the testing of neurotherapeutics in models of perinatal brain injury, with an applied case study of human umbilical-cord MSC.

Journal of neuroinflammation·2025
Same author

AsaruSim: a single-cell and spatial RNA-Seq Nanopore long-reads simulation workflow.

Bioinformatics (Oxford, England)·2025
Same author

Vascular dysfunction is at the onset of oxaliplatin-induced peripheral neuropathy symptoms in mice.

Life science alliance·2024
Same author

Comparative transcriptomics reveal a novel tardigrade-specific DNA-binding protein induced in response to ionizing radiation.

eLife·2024
Same author

A Screening Study Identified Decitabine as an Inhibitor of Equid Herpesvirus 4 That Enhances the Innate Antiviral Response.

Viruses·2024
Same author

Deleterious effect of sustained neuroinflammation in pediatric traumatic brain injury.

Brain, behavior, and immunity·2024
Same journal

conMItion: an R package adjusting confounding factors for associations in multi-omics.

Bioinformatics (Oxford, England)·2026
Same journal

SpaMFG: a Spatial Multi-omics Integration Method based on Feature Grouping.

Bioinformatics (Oxford, England)·2026
Same journal

CSCN: Inference of Cell-Specific Causal Networks Using Single-Cell RNA-Seq Data.

Bioinformatics (Oxford, England)·2026
Same journal

Sparse CCA-Based Mediation Analysis with High-Dimensional Exposures and Mediators.

Bioinformatics (Oxford, England)·2026
Same journal

Enhancing Cross-Context Generalization in Drug Perturbation Prediction with a Multimodal Conditional Diffusion Framework.

Bioinformatics (Oxford, England)·2026
Same journal

Primer Design through Submodular Function Estimation.

Bioinformatics (Oxford, England)·2026
See all related articles

Aozan software automates data management and quality control for Illumina sequencing runs, saving time and disk space. It enhances run monitoring through automatic reports and emails.

Area of Science:

  • Genomics
  • Bioinformatics

Background:

  • Illumina sequencer data management is resource-intensive.
  • Automating data handling is crucial for efficient genomic research.

Purpose of the Study:

  • To develop an automated software solution for Illumina sequencing data.
  • To improve the efficiency of data management and quality control.

Main Methods:

  • Aozan software was developed using Java and Python.
  • The software automates data transfer, demultiplexing, conversion, and quality control.
  • It provides automatic email alerts and HTML web reports for monitoring.

Main Results:

  • Aozan significantly reduces the time and disk space required for data management.

Related Experiment Videos

  • Automated quality control ensures reliable sequencing output.
  • Enhanced monitoring provides real-time insights into run statistics.

    • Conclusions:

    • Aozan streamlines Illumina sequencing workflows.
    • The software improves data management efficiency and run monitoring capabilities.