Caspase recruitment domain 9, microbiota, and tryptophan metabolism: dangerous liaisons in inflammatory bowel diseases
Related Experiment Video
Updated: Aug 15, 2026

Injections of Lipopolysaccharide into Mice to Mimic Entrance of Microbial-derived Products After Intestinal Barrier Breach
Published on: May 2, 2018
Bruno Lamas1, Mathias L Richard, Harry Sokol
1aSorbonne University-Pierre and Marie Curie University bINSERM ERL 1157, Avenir Team Gut Microbiota and Immunity cCNRS UMR 7203 dLaboratoire de BioMolécules (LBM), CHU Saint-Antoine eMicalis Institute, INRA, Agro Paris Tech, Université Paris-Saclay, Jouy-en-Josas fInflammation-Immunopathology-Biotherapy Department (DHU i2B) gDepartment of Gastroenterology, Saint Antoine Hospital, Assistance Publique-Hopitaux de Paris, Pierre and Marie Curie University, Paris, France.
Insights
Caspase recruitment domain 9 (CARD9) gene variants impair gut bacteria's ability to produce tryptophan metabolites, increasing susceptibility to inflammatory bowel diseases (IBD). Restoring these microbial functions may be a therapeutic strategy for IBD.
Area of Science:
- Microbiology
- Immunology
- Genetics
Background:
- Inflammatory bowel diseases (IBD) result from genetic, microbial, and environmental factors.
- Caspase recruitment domain 9 (CARD9) is an identified IBD susceptibility gene.
- Gut microbiota plays a crucial role in maintaining intestinal homeostasis.
Purpose of the Study:
- To investigate the role of CARD9 in colitis susceptibility.
- To explore the link between CARD9, gut microbiota, and tryptophan metabolism.
- To understand the mechanism of CARD9-associated IBD pathogenesis.
Main Methods:
- Analysis of CARD9-deficient mice models.
- Assessment of gut microbiota composition and function.
- Measurement of tryptophan metabolites and interleukin-22 production.
- Evaluation of aryl hydrocarbon receptor (AhR) activation.
Main Results:
- CARD9-deficient mice exhibit increased susceptibility to colitis.
- Impaired interleukin-22 signaling is observed in CARD9 mice.
- Gut microbiota in CARD9 mice shows defective tryptophan metabolism, leading to reduced AhR ligand production.
- Reduced AhR ligand production is also noted in IBD patients with CARD9 risk alleles.
Conclusions:
- CARD9 influences colitis susceptibility by shaping gut microbiota's tryptophan metabolism.
- Defective AhR activation due to impaired microbial tryptophan metabolism contributes to IBD pathogenesis.
- Restoring microbial production of AhR ligands presents a potential therapeutic avenue for IBD.
Purpose Of Review:
Inflammatory bowel diseases (IBDs) develop as a result of a combination of genetic predisposition, dysbiosis of the gut microbiota, and environmental influences. Here, we describe an example of how caspase recruitment domain 9 (CARD9), one of the numerous IBD susceptibility genes, participate to colitis susceptibility by shaping gut microbiota to produce tryptophan metabolites.
Recent Findings:
Recent study showed that CARD9 mice are more susceptible to colitis as a result of impaired interleukin 22 signaling pathway. Furthermore, aryl hydrocarbon receptor (AhR) ligands from tryptophan metabolism by the gut microbiota participate to intestinal homeostasis by inducing production of interleukin 22 by intestinal immune cells. These data suggest an interaction between CARD9 and the ability of gut microbiota to produce AhR ligands.
Summary:
The microbiota from CARD9 mice fails to metabolize tryptophan leading to defective AhR activation which contributes to the susceptibility of mice to colitis by decreased interleukin 22 production. These effects were abrogated in the presence of AhR agonist. Reduced production of AhR ligands is also observed in the microbiota from individuals with IBD, particularly in those with CARD9 risk alleles associated with IBD. Correcting impaired microbiota functions, such as ability to produce AhR ligands, is an attractive strategy in IBD.
Related Concept Videos
Caspases
Drugs for Treatment of Crohn's Disease in IBD Using Biologic Agents: Anti-TNF
Functions of the Gut Microbiota
Dysbiosis of the Gut Microbiota
Inflammatory Bowel Disease II: Ulcerative Colitis
Inflammatory Bowel Disease III: Crohn's Disease

