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IcyTree: rapid browser-based visualization for phylogenetic trees and networks.

Timothy G Vaughan1

  • 1Department of Computer Science, University of Auckland, Auckland 1010, New Zealand.

Bioinformatics (Oxford, England)
|April 14, 2017
PubMed
Summary
This summary is machine-generated.

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IcyTree is a free, web-based application for visualizing phylogenetic trees and networks. It offers an intuitive interface for exploring large datasets, supporting features like ancestral recombination graphs and trait visualization.

Area of Science:

  • Bioinformatics
  • Computational Biology
  • Evolutionary Biology

Background:

  • Phylogenetic tree visualization is crucial for understanding evolutionary relationships.
  • Existing tools often lack comprehensive network support or online accessibility.

Purpose of the Study:

  • To introduce IcyTree, a novel, web-based application for visualizing phylogenetic trees and networks.
  • To highlight IcyTree's unique features and advantages over existing software.

Main Methods:

  • IcyTree is a client-side JavaScript web application, requiring no plugins.
  • It is accessible via modern web browsers and functions offline after loading.
  • Source code is available under the GNU General Public License.

Main Results:

Related Experiment Videos

  • IcyTree provides an easy-to-use, responsive interface for diverse phylogenetic visualizations.
  • It supports phylogenetic networks, including ancestral recombination graphs.
  • Efficient rendering of large trees with associated data (e.g., ancestral locations, trait values) is achieved.
  • Intuitive panning and zooming facilitate exploration of trees with thousands of taxa.

Conclusions:

  • IcyTree is a versatile and accessible tool for phylogenetic data visualization.
  • Its online nature, network support, and efficient handling of large datasets make it a valuable resource for researchers.
  • The application's usability and feature set distinguish it from other available viewers.