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Published on: June 15, 2011
The Application of Next-Generation Sequencing for Mutation Detection in Autosomal-Dominant Hereditary Hearing
Nicolas Gürtler1, Benno Röthlisberger, Katja Ludin
1*Department of Otolaryngology, University Hospital Basel, Basel †Medical Genetics, Center for Laboratory Medicine, Cantonal Hospital Aarau, Aarau ‡Department of Otolaryngology, Cantonal Hospital Luzern, Luzern, Switzerland §Department of Otolaryngology, Columbia University, New York, New York, USA.
Objective:
Identification of the causative mutation using next-generation sequencing in autosomal-dominant hereditary hearing impairment, as mutation analysis in hereditary hearing impairment by classic genetic methods, is hindered by the high heterogeneity of the disease.
Patients:
Two Swiss families with autosomal-dominant hereditary hearing impairment.
Intervention:
Amplified DNA libraries for next-generation sequencing were constructed from extracted genomic DNA, derived from peripheral blood, and enriched by a custom-made sequence capture library. Validated, pooled libraries were sequenced on an Illumina MiSeq instrument, 300 cycles and paired-end sequencing. Technical data analysis was performed with SeqMonk, variant analysis with GeneTalk or VariantStudio. The detection of mutations in genes related to hearing loss by next-generation sequencing was subsequently confirmed using specific polymerase-chain-reaction and Sanger sequencing.
Main Outcome Measure:
Mutation detection in hearing-loss-related genes.
Results:
The first family harbored the mutation c.5383+5delGTGA in the TECTA-gene. In the second family, a novel mutation c.2614-2625delCATGGCGCCGTG in the WFS1-gene and a second mutation TCOF1-c.1028G>A were identified.
Conclusion:
Next-generation sequencing successfully identified the causative mutation in families with autosomal-dominant hereditary hearing impairment. The results helped to clarify the pathogenic role of a known mutation and led to the detection of a novel one. NGS represents a feasible approach with great potential future in the diagnostics of hereditary hearing impairment, even in smaller labs.
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