Related Experiment Video
Updated: Mar 3, 2026

A Web Tool for Generating High Quality Machine-readable Biological Pathways
Published on: February 8, 2017
Olelo: a web application for intuitive exploration of biomedical literature
Milena Kraus1, Julian Niedermeier1, Marcel Jankrift1
1Department of Enterprise Platforms and Integration Concepts, Hasso Plattner Institute, August-Bebel-Strasse 88, Potsdam 14482, Germany.
Abstract:
Researchers usually query the large biomedical literature in PubMed via keywords, logical operators and filters, none of which is very intuitive. Question answering systems are an alternative to keyword searches. They allow questions in natural language as input and results reflect the given type of question, such as short answers and summaries. Few of those systems are available online but they experience drawbacks in terms of long response times and they support a limited amount of question and result types. Additionally, user interfaces are usually restricted to only displaying the retrieved information. For our Olelo web application, we combined biomedical literature and terminologies in a fast in-memory database to enable real-time responses to researchers' queries. Further, we extended the built-in natural language processing features of the database with question answering and summarization procedures. Combined with a new explorative approach of document filtering and a clean user interface, Olelo enables a fast and intelligent search through the ever-growing biomedical literature. Olelo is available at http://www.hpi.de/plattner/olelo.
Related Concept Videos
Applications Of NMR In Biology
Genetic Screens
Forward genetic screens
Forward or “classical” genetic screens involve creating random mutations in an organism’s DNA using radiation, mutagens, or insertion of additional bases, which...
Drug Discovery: Overview
Statistical Software for Data Analysis and Clinical Trials

