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A Reporter Assay to Analyze Intronic microRNA Maturation in Mammalian Cells
Published on: June 16, 2022
Oleic Acid Induces MiR-7 Processing through Remodeling of Pri-MiR-7/Protein Complex
Santosh Kumar1, Angela Downie Ruiz Velasco1, Gracjan Michlewski1
1Wellcome Trust Centre for Cell Biology, University of Edinburgh, Michael Swann Building, Edinburgh, EH9 3BF, UK.
Abstract:
MicroRNAs (miRs) play a vital role in governing cell function, with their levels tightly controlled at transcriptional and post-transcriptional levels. Different sets of RNA-binding proteins interact with primary miRs (pri-miRs) and precursor-miR transcripts (pre-miRs), controlling their biogenesis post-transcriptionally. The Hu antigen R (HuR)-mediated binding of Musashi homolog2 (MSI2) to the conserved terminal loop of pri-miR-7 regulates the levels of brain-enriched miR-7 formation in a tissue-specific manner. Here, we show that oleic acid (OA) inhibits the binding of proteins containing RNA recognition motifs (RRM) to the conserved terminal loop of pri-miR-7. Using electrophoretic mobility shift assays in HeLa cell extracts, we show that OA treatment disrupts pre-miR/protein complexes. Furthermore, OA rescues in vitro processing of pri-miR-7, which is otherwise blocked by HuR and MSI2 proteins. On the contrary, pri-miR-16 shows reduced processing in the presence of OA. This indicates that OA may inhibit the binding of other RRM-containing protein/s necessary for miR-16 processing. Finally, we demonstrate that OA induces mature miR-7 production in HeLa cells. Together, our results demonstrate that OA can regulate the processing of pri-miRs by remodeling their protein complexes. This provides a new tool to study RNA processing and a potential lead for small molecules that target the miR-7 biogenesis pathway.
Insights
Oleic acid (OA) regulates microRNA (miR) processing by disrupting protein binding to pri-miRs. OA promotes miR-7 production by interfering with HuR and MSI2, offering a new tool for studying RNA biogenesis.
Area of Science:
- Molecular Biology
- Biochemistry
- Genetics
Background:
- MicroRNAs (miRs) are critical regulators of cellular functions, with their biogenesis controlled at multiple levels.
- RNA-binding proteins (RBPs) interact with primary miRs (pri-miRs) and precursor miRs (pre-miRs) to modulate their post-transcriptional processing.
- The interaction of Hu antigen R (HuR) and Musashi homolog2 (MSI2) with pri-miR-7 regulates brain-enriched miR-7 levels.
Purpose of the Study:
- To investigate the effect of oleic acid (OA) on microRNA biogenesis.
- To determine how OA influences the interaction of RBPs with pri-miRs.
- To explore OA as a potential regulator of miR-7 processing.
Main Methods:
- Electrophoretic mobility shift assays (EMSA) were used to analyze protein-RNA interactions in HeLa cell extracts.
- In vitro processing assays were performed to assess the impact of OA on pri-miR-7 and pri-miR-16 processing.
- OA's effect on mature miR-7 production in HeLa cells was measured.
Main Results:
- Oleic acid (OA) inhibits the binding of RNA recognition motif (RRM)-containing proteins to the terminal loop of pri-miR-7.
- OA treatment disrupts pre-miR/protein complexes and rescues in vitro processing of pri-miR-7, overcoming inhibition by HuR and MSI2.
- OA reduces pri-miR-16 processing, suggesting inhibition of other necessary RRM-containing proteins, and induces mature miR-7 production in HeLa cells.
Conclusions:
- Oleic acid (OA) regulates pri-miR processing by altering protein complex formation.
- OA's ability to modulate miR-7 biogenesis provides a novel tool for RNA processing research.
- OA represents a potential lead for developing small molecules targeting the miR-7 biogenesis pathway.
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