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Updated: Mar 2, 2026

Coral Reef Arks: An In Situ Mesocosm and Toolkit for Assembling Reef Communities
Published on: January 6, 2023
Microbial processes driving coral reef organic carbon flow.
Cynthia B Silveira1,2, Giselle S Cavalcanti1,2, Juline M Walter1
1Institute of Biology and COPPE/SAGE, Federal University of Rio de Janeiro. Av. Carlos Chagas Filho, 373, Cidade Universitária, RJ 21941-599, Brazil.
Coral reefs experience microbial phase shifts when species change, impacting carbon flow and ecosystem resilience. These shifts in microbial communities can lead to degraded reef states.
Area of Science:
- Marine Biology
- Microbial Ecology
- Ecosystem Dynamics
Background:
- Coral reefs are highly productive ecosystems, comparable to rainforests.
- Benthic organisms release significant organic matter as mucus, fueling rapid microbial growth.
- Anthropogenic disturbances can lead to phase shifts from coral to fleshy organism dominance.
Purpose of the Study:
- To review microbial processes in coral reef organic carbon flux during species phase shifts.
- To identify ecosystem-level microbial responses to benthic phase shifts.
- To discuss the role of microbial consumption in reef trophic dynamics and resilience.
Main Methods:
- Literature review of microbial processes in coral reefs.
- Analysis of microbial community composition, biomass, metabolism, and viral predation.
- Examination of organic carbon flux and trophic relationships.
Main Results:
- Microbial communities within the coral holobiont are key to reef carbon flow.
- Benthic species phase shifts alter microbial community composition, biomass, metabolism, and viral predation.
- Microbial consumption of benthic organic matter significantly impacts reef trophic relationships.
Conclusions:
- Microbial phase shifts are linked to reduced coral reef resilience.
- These shifts can facilitate transitions to degraded ecosystem states.
- Understanding microbial roles is crucial for coral reef conservation and management.
Related Concept Videos
The Carbon Cycle
Primary Production
Carbon-dioxide Fixation
Bioremediation
Environmental Applications of Microorganisms
What are Biogeochemical Cycles?

