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Updated: Mar 2, 2026

Immunopeptidomics: Isolation of Mouse and Human MHC Class I- and II-Associated Peptides for Mass Spectrometry Analysis
Published on: October 15, 2021
HLA-DP84Gly constitutively presents endogenous peptides generated by the class I antigen processing pathway
Yuki Yamashita1, Mark Anczurowski1,2, Munehide Nakatsugawa1
1Tumor Immunotherapy Program, Campbell Family Institute for Breast Cancer Research, Campbell Family Cancer Research Institute, Princess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada M5G 2M9.
Human leukocyte antigen DP (DP) molecules with Gly84 (DP84Gly) can present endogenous peptides, unlike other class II molecules. This unique pathway allows DP84Gly to utilize both class I and II antigen processing routes.
Area of Science:
- Immunology
- Molecular Biology
- Genetics
Background:
- Classical antigen processing presents peptides via MHC class I (endogenous) and MHC class II (exogenous) pathways.
- HLA-DP molecules are a subset of MHC class II molecules with distinct processing and presentation characteristics.
Purpose of the Study:
- To investigate the antigen processing and presentation capabilities of HLA-DP molecules encoding Gly84 (DP84Gly).
- To determine if DP84Gly utilizes classical MHC class I or class II pathways for peptide presentation.
Main Methods:
- Analysis of invariant chain (Ii) binding to DP84Gly, focusing on the CLIP region.
- Investigation of peptide presentation from endogenous sources by DP84Gly.
- Tracking the cellular transport of DP84Gly from the endoplasmic reticulum (ER) to endosomal/lysosomal compartments.
- Assessing the role of the transporter associated with antigen processing (TAP) in DP84Gly peptide loading.
Main Results:
- DP84Gly constitutively presents endogenous peptides, a function typically associated with MHC class I molecules.
- DP84Gly does not bind or present the class II-associated invariant chain peptide (CLIP).
- Invariant chain (Ii) facilitates DP84Gly transport via non-CLIP regions in a pH-sensitive manner, independent of CLIP binding.
- DP84Gly presents peptides processed by the proteasome and transported by TAP, similar to MHC class I molecules.
- DP84Gly, found in humans and common chimpanzees, uniquely integrates both endogenous and exogenous antigen processing pathways.
Conclusions:
- DP84Gly exhibits a unique dual-pathway antigen presentation mechanism, utilizing both MHC class I and II processing routes.
- This distinct mechanism allows DP84Gy to present peptides derived from both intracellular and extracellular sources.
- The findings reveal a novel aspect of immune surveillance involving HLA-DP molecules specific to humans and chimpanzees.
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