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Updated: Mar 2, 2026

Continuous Fluorescence-Based Endonuclease-Coupled DNA Methylation Assay to Screen for DNA Methyltransferase Inhibitors
Published on: August 5, 2022
Inhibiting translesion DNA synthesis as an approach to combat drug resistance to DNA damaging agents
Jung-Suk Choi1, Seol Kim2, Edward Motea3
1Department of Chemistry, Cleveland State University, Cleveland, OH 44115, USA.
Abstract:
Anti-cancer agents exert therapeutic effects by damaging DNA. Unfortunately, DNA polymerases can effectively replicate the formed DNA lesions to cause drug resistance and create more aggressive cancers. To understand this process at the cellular level, we developed an artificial nucleoside that visualizes the replication of damaged DNA to identify cells that acquire drug resistance through this mechanism. Visualization is achieved using "click" chemistry to covalently attach azide-containing fluorophores to the ethynyl group present on the nucleoside analog after its incorporation opposite damaged DNA. Flow cytometry and microscopy techniques demonstrate that the extent of nucleotide incorporation into genomic DNA is enhanced by treatment with DNA damaging agents. In addition, this nucleoside analog inhibits translesion DNA synthesis and synergizes the therapeutic activity of certain anti-cancer agents such as temozolomide. The combined diagnostic and therapeutic activities of this synthetic nucleoside analog represent a new paradigm in personalized medicine.
Insights
Researchers developed a novel nucleoside analog to visualize and track DNA repair in cancer cells, aiding in the identification of drug-resistant mechanisms and enhancing anti-cancer therapy effectiveness.
Area of Science:
- Molecular Biology
- Cancer Research
- Drug Development
Background:
- Anti-cancer drugs damage DNA, but cancer cells can develop resistance by replicating these lesions.
- Understanding DNA replication across damaged sites is crucial for overcoming therapeutic resistance.
Purpose of the Study:
- To develop a tool for visualizing and identifying cells with drug resistance mechanisms involving DNA replication.
- To investigate the potential of a novel nucleoside analog in cancer diagnostics and therapeutics.
Main Methods:
- An artificial nucleoside analog with an ethynyl group was synthesized.
- Click chemistry was used to attach azide-containing fluorophores for visualization.
- Flow cytometry and microscopy were employed to analyze nucleotide incorporation and cellular response.
Main Results:
- Nucleotide incorporation into genomic DNA increased upon treatment with DNA damaging agents.
- The nucleoside analog inhibited translesion DNA synthesis.
- The analog demonstrated synergy with anti-cancer agents like temozolomide, enhancing therapeutic activity.
Conclusions:
- The developed nucleoside analog enables visualization of damaged DNA replication, identifying drug-resistant cells.
- This tool offers combined diagnostic and therapeutic potential for personalized cancer medicine.
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