Related Experiment Video
Updated: Mar 2, 2026

Correlative Microscopy for 3D Structural Analysis of Dynamic Interactions
Published on: June 24, 2013
SU-E-T-475: Nano-Dosimetric Track Structure Scoring including Biological Modeling with TOPAS-NBio
1Massachusetts General Hospital, Boston, MA.
Purpose:
To develop a nano-dosimetric Monte Carlo simulation package, TOPAS-nBio, based on the TOPAS (TOol for PArticle Simulations) framework that is being developed in a collaboration between the Massachusetts General Hospital (MGH), the SLAC National Accelerator Laboratory and the University of California, San Francisco. The goal is to incorporate biological processes on a sub-cell level that will provide the basis for a wide range of research in the field of radiobiology, such as bystander effects, biological dose calculations and effects of nano-particles on radiation therapy.
Methods:
The TOPAS framework has been utilized to extend the functionality of this tool for particle transport to include nano- dosimetry. The physics lists of TOPAS have been extended to include efforts by the Geant4-DNA group to model physics on nanometer scales, including chemical processes of the first millisecond after irradiation. TOPAS-nBio uses the functionality of TOPAS to score energy depositions on nanometer scales. A simulation of the setup of a cell culture irradiation experiment has been used as to test the feasibility of the project.
Results:
Track structures for an irradiation of a cell culture experiment were successfully obtained. Delta-electron distributions have been produced and single track delta electrons and their energy depositions were observed.
Conclusions:
This study is a first step in the development of TOPAS-nBio, a tool that aims at bringing nanometer scale radiation physics and biology together and make Monte Carlo simulations accessible for all radiobiology researchers. The results presented here show a first proof of concept for the development of TOPAS-nBio.
More Related Videos
09:17Structure-Based Simulation and Sampling of Transcription Factor Protein Movements along DNA from Atomic-Scale Stepping to Coarse-Grained Diffusion
Published on: March 1, 2022
10:24Neutron Radiography and Computed Tomography of Biological Systems at the Oak Ridge National Laboratory's High Flux Isotope Reactor
Published on: May 7, 2021