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Updated: Mar 2, 2026

Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
CYP21A2 intronic variants causing 21-hydroxylase deficiency.
Paola Concolino1, Roberta Rizza1, Alessandra Costella1
1Laboratory of Molecular Biology, Institute of Biochemistry and Clinical Biochemistry, Catholic University, Largo A. Gemelli 8, 00168 Rome, Italy.
This study reviews intronic variants in the steroid 21-hydroxylase gene (CYP21A2), a cause of congenital adrenal hyperplasia (CAH). Three novel intronic variants were identified, confirming their role in causing non-functional proteins and classic CAH.
Area of Science:
- Genetics
- Endocrinology
- Molecular Biology
Background:
- Congenital adrenal hyperplasia (CAH) is a group of autosomal recessive disorders.
- Defects in the steroid 21-hydroxylase gene (CYP21A2) are the primary cause of CAH.
- Most CYP21A2 mutations arise from recombination with the CYP21A1P pseudogene, but rare intronic variants also cause disease.
Purpose of the Study:
- To conduct a comprehensive literature review of all reported intronic CYP21A2 pathological variants.
- To identify and characterize novel intronic variants in patients with classic CAH.
- To analyze the impact of these variants on protein function and splicing.
Main Methods:
- Literature search for intronic CYP21A2 variants.
- Genetic analysis of patients with classic CAH.
- In silico analysis to predict the effect of variants on splicing.
Main Results:
- A comprehensive review of intronic CYP21A2 variants was compiled.
- Three novel intronic variants (IVS4-1G>A, IVS5-8T>A, IVS8-2A>G) were identified in patients with classic CAH.
- In silico analysis indicated that these novel variants disrupt the splicing process, leading to non-functional CYP21A2 protein.
Conclusions:
- Intronic variants in CYP21A2 are a significant, though less common, cause of 21-hydroxylase deficiency.
- The identified novel variants are pathogenic and contribute to the development of classic CAH.
- These findings underscore the importance of evaluating intronic regions for mutations in diagnosing CAH.
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