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Updated: Mar 1, 2026

Constructing Mutants in Serotype 1 Streptococcus pneumoniae strain 519/43
Published on: September 11, 2020
Promiscuous signaling by a regulatory system unique to the pandemic PMEN1 pneumococcal lineage
Anagha Kadam1, Rory A Eutsey1, Jason Rosch2
1Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America.
Abstract:
Streptococcus pneumoniae (pneumococcus) is a leading cause of death and disease in children and elderly. Genetic variability among isolates from this species is high. These differences, often the product of gene loss or gene acquisition via horizontal gene transfer, can endow strains with new molecular pathways, diverse phenotypes, and ecological advantages. PMEN1 is a widespread and multidrug-resistant pneumococcal lineage. Using comparative genomics we have determined that a regulator-peptide signal transduction system, TprA2/PhrA2, was acquired by a PMEN1 ancestor and is encoded by the vast majority of strains in this lineage. We show that TprA2 is a negative regulator of a PMEN1-specific gene encoding a lanthionine-containing peptide (lcpA). The activity of TprA2 is modulated by its cognate peptide, PhrA2. Expression of phrA2 is density-dependent and its C-terminus relieves TprA2-mediated inhibition leading to expression of lcpA. In the pneumococcal mouse model with intranasal inoculation, TprA2 had no effect on nasopharyngeal colonization but was associated with decreased lung disease via its control of lcpA levels. Furthermore, the TprA2/PhrA2 system has integrated into the pneumococcal regulatory circuitry, as PhrA2 activates TprA/PhrA, a second regulator-peptide signal transduction system widespread among pneumococci. Extracellular PhrA2 can release TprA-mediated inhibition, activating expression of TprA-repressed genes in both PMEN1 cells as well as another pneumococcal lineage. Acquisition of TprA2/PhrA2 has provided PMEN1 isolates with a mechanism to promote commensalism over dissemination and control inter-strain gene regulation.
Insights
The TprA2/PhrA2 system in Streptococcus pneumoniae regulates lung disease by controlling lcpA gene expression. This system promotes commensalism and influences inter-strain gene regulation.
Area of Science:
- Microbiology
- Genomics
- Bacterial Pathogenesis
Background:
- Streptococcus pneumoniae causes significant global mortality and morbidity, particularly in vulnerable populations.
- High genetic variability in S. pneumoniae arises from gene gain/loss, impacting virulence and ecological fitness.
- The PMEN1 lineage is a prevalent, multidrug-resistant strain with unique genetic adaptations.
Purpose of the Study:
- To investigate the function and impact of the TprA2/PhrA2 regulator-peptide system in the S. pneumoniae PMEN1 lineage.
- To determine the role of TprA2/PhrA2 in bacterial colonization, disease progression, and inter-strain interactions.
- To understand how horizontal gene transfer contributes to the evolution of pneumococcal virulence and regulation.
Main Methods:
- Comparative genomics to identify the presence and distribution of the TprA2/PhrA2 system in PMEN1 strains.
- Molecular biology techniques to study the regulatory interactions between TprA2, PhrA2, and lcpA.
- In vivo studies using a mouse model of pneumococcal intranasal inoculation to assess colonization and lung disease.
Main Results:
- The TprA2/PhrA2 system was acquired by a PMEN1 ancestor and is widespread in this lineage.
- TprA2 acts as a negative regulator of the PMEN1-specific lanthionine-containing peptide gene (lcpA), with activity modulated by PhrA2.
- In vivo, TprA2 reduced lung disease severity by controlling lcpA expression, without affecting nasopharyngeal colonization.
- The PhrA2 peptide can activate a second regulator-peptide system (TprA/PhrA), influencing gene expression in multiple pneumococcal lineages.
Conclusions:
- The TprA2/PhrA2 system provides PMEN1 isolates with a mechanism to balance commensalism and dissemination, thereby controlling lung disease.
- Acquisition of this system allows for regulation of inter-strain interactions and adaptation to host environments.
- This study highlights the role of horizontal gene transfer in shaping pneumococcal virulence and regulatory networks.
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