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Updated: Mar 1, 2026

In Vitro and In Vivo Detection of Mitophagy in Human Cells, C. Elegans, and Mice
Published on: November 22, 2017
ER-mitochondria signaling regulates autophagy
Patricia Gomez-Suaga1, Sebastien Paillusson1, Christopher C J Miller1
1a Department of Basic and Clinical Neuroscience , Institute of Psychiatry, Psychology and Neuroscience, Kings College London , London , UK.
Abstract:
The endoplasmic reticulum (ER) and mitochondria form tight functional contacts that regulate several key cellular processes. The formation of these contacts involves "tethering proteins" that function to recruit regions of ER to mitochondria. The integral ER protein VAPB (VAMP associated protein B and C) binds to the outer mitochondrial membrane protein, RMDN3/PTPIP51 (regulator of microtubule dynamics 3) to form one such set of tethers. Recently, we showed that the VAPB-RMDN3 tethers regulate macroautophagy/autophagy. Small interfering RNA (siRNA) knockdown of VAPB or RMDN3 to loosen ER-mitochondria contacts stimulates autophagosome formation, whereas overexpression of VAPB or RMDN3 to tighten contacts inhibit their formation. Artificial tethering of ER and mitochondria via expression of a synthetic linker protein also reduces autophagy and this artificial tether rescues the effects of VAPB- or RMDN3-targeted siRNA loss on autophagosome formation. Finally, our studies revealed that the modulatory effects of ER-mitochondria contacts on autophagy involve their role in mediating ITPR (inositol 1,4,5-trisphosphate receptor) delivery of Ca2+ from ER stores to mitochondria.
Insights
Endoplasmic reticulum-mitochondria tethers regulate autophagy. Loosening these contacts via VAPB/RMDN3 knockdown stimulates autophagosome formation, while tightening inhibits it, involving calcium signaling.
Area of Science:
- Cell Biology
- Organelle Communication
Background:
- Endoplasmic reticulum (ER) and mitochondria form crucial functional contacts regulated by tethering proteins.
- VAMP associated protein B and C (VAPB) and regulator of microtubule dynamics 3 (RMDN3/PTPIP51) form ER-mitochondria tethers.
- These tethers are implicated in regulating cellular processes, including autophagy.
Purpose of the Study:
- To investigate the role of VAPB-RMDN3 tethers in regulating macroautophagy/autophagy.
- To elucidate the mechanisms by which ER-mitochondria contacts influence autophagosome formation.
Main Methods:
- Small interfering RNA (siRNA) knockdown of VAPB and RMDN3.
- Overexpression of VAPB and RMDN3.
- Utilizing a synthetic linker protein for artificial ER-mitochondria tethering.
- Assessing autophagosome formation.
- Investigating the role of inositol 1,4,5-trisphosphate receptor (ITPR)-mediated calcium signaling.
Main Results:
- siRNA-mediated knockdown of VAPB or RMDN3, which loosens ER-mitochondria contacts, stimulates autophagosome formation.
- Overexpression of VAPB or RMDN3, which tightens contacts, inhibits autophagosome formation.
- Artificial tethering reduces autophagy, and this effect is rescued by VAPB/RMDN3 siRNA.
- ER-mitochondria contact-mediated autophagy regulation involves ITPR-dependent calcium delivery to mitochondria.
Conclusions:
- VAPB-RMDN3 tethers play a critical role in modulating autophagy.
- The extent of ER-mitochondria contact influences autophagosome formation.
- Calcium signaling via ITPR is a key mechanism linking ER-mitochondria contacts to autophagy regulation.
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