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High-resolution In Vivo Manual Segmentation Protocol for Human Hippocampal Subfields Using 3T Magnetic Resonance Imaging
Published on: November 10, 2015
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Development of a histologically validated segmentation protocol for the hippocampal body
Trevor A Steve1, Clarissa L Yasuda2, Roland Coras3
1Division of Neurology, Department of Medicine, University of Alberta, 11350 83 Ave NW, Edmonton, AB T6G 2G3, Canada.
Neuroimage
|June 8, 2017
Summary
A new method using MRI landmarks accurately segments hippocampal subfields, validated by histology. This technique shows promise for in vivo studies of brain anatomy and disease.
Area of Science:
- Neuroimaging
- Neuroanatomy
- Histology
Background:
- Hippocampal subfield segmentation is crucial for understanding disease-related changes.
- Current in vivo MRI segmentation lacks histological validation.
- MRI-visible landmarks are essential for accurate segmentation.
Purpose of the Study:
- Develop and validate a novel hippocampal body segmentation method using MRI landmarks.
- Compare the novel method's accuracy against existing techniques and histological gold standards.
- Assess the feasibility of applying the novel method to in vivo MRI studies.
Main Methods:
- Developed a novel segmentation protocol for the hippocampal body using stratum lacunosum moleculare (SLM) and dentate gyrus (DG) landmarks.
- Performed ultra-high resolution ex vivo MRI on cadaveric hippocampi, followed by histological processing.
- Compared segmentation accuracy of the novel method and two published strategies against direct histological measurements.
Main Results:
- The novel method accurately measured CA1/CA2 (ICC=0.93) and CA2/CA3 (ICC=0.97) boundaries on histology.
- Published methods showed lower accuracy, particularly for the Subiculum/CA1 boundary.
- Ex vivo MRI measurements using the novel method correlated with histological findings for SLM length and CA1/CA2, CA2/CA3 boundaries.
Conclusions:
- A novel segmentation method utilizing SLM and DG landmarks provides accurate hippocampal subfield measurements.
- The developed method demonstrates high accuracy compared to existing techniques and histological data.
- Findings support the potential application of this method for in vivo MRI studies of hippocampal anatomy.
Keywords:
Ex vivo magnetic resonance imaging (MRI)Hippocampal subfieldsHippocampusManual segmentation
