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Updated: Feb 28, 2026

Neutron Crystallography Data Collection and Processing for Modelling Hydrogen Atoms in Protein Structures
Published on: December 1, 2020
Crystal structures and atomic model of NADPH oxidase
Francesca Magnani1, Simone Nenci2, Elisa Millana Fananas2
1Department of Biology and Biotechnology "L. Spallanzani," University of Pavia, 27100 Pavia, Italy; francesca.magnani@unipv.it andrea.mattevi@unipv.it.
Abstract:
NADPH oxidases (NOXs) are the only enzymes exclusively dedicated to reactive oxygen species (ROS) generation. Dysregulation of these polytopic membrane proteins impacts the redox signaling cascades that control cell proliferation and death. We describe the atomic crystal structures of the catalytic flavin adenine dinucleotide (FAD)- and heme-binding domains of Cylindrospermum stagnale NOX5. The two domains form the core subunit that is common to all seven members of the NOX family. The domain structures were then docked in silico to provide a generic model for the NOX family. A linear arrangement of cofactors (NADPH, FAD, and two membrane-embedded heme moieties) injects electrons from the intracellular side across the membrane to a specific oxygen-binding cavity on the extracytoplasmic side. The overall spatial organization of critical interactions is revealed between the intracellular loops on the transmembrane domain and the NADPH-oxidizing dehydrogenase domain. In particular, the C terminus functions as a toggle switch, which affects access of the NADPH substrate to the enzyme. The essence of this mechanistic model is that the regulatory cues conformationally gate NADPH-binding, implicitly providing a handle for activating/deactivating the very first step in the redox chain. Such insight provides a framework to the discovery of much needed drugs that selectively target the distinct members of the NOX family and interfere with ROS signaling.
Insights
NADPH oxidases (NOXs) generate reactive oxygen species (ROS). This study reveals the atomic structure of NOX5 domains, modeling the entire NOX family
Area of Science:
- Biochemistry
- Molecular Biology
- Structural Biology
Background:
- NADPH oxidases (NOXs) are crucial enzymes for reactive oxygen species (ROS) production.
- Dysregulation of NOXs affects cell proliferation and death pathways.
- Understanding NOX structure is key to targeting ROS signaling.
Purpose of the Study:
- To determine the atomic crystal structures of the catalytic FAD- and heme-binding domains of Cylindrospermum stagnale NOX5.
- To develop a generic structural model for the entire NOX family using in silico docking.
- To elucidate the electron transfer mechanism and regulatory gating of NADPH binding.
Main Methods:
- X-ray crystallography to determine atomic structures of NOX5 domains.
- In silico docking to model the complete NOX enzyme structure.
- Analysis of cofactor arrangement and protein-substrate interactions.
Main Results:
- Atomic structures of the FAD- and heme-binding domains of NOX5 were resolved.
- A generic model for the NOX family reveals a linear cofactor arrangement for electron transfer across the membrane.
- The C-terminal region acts as a regulatory switch, controlling NADPH substrate access.
Conclusions:
- The study provides a mechanistic model for NOX function, highlighting regulatory gating of NADPH binding.
- This structural insight is crucial for developing targeted drugs against specific NOX family members.
- Understanding NOX regulation offers a framework for modulating ROS signaling in various diseases.
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