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Updated: Feb 28, 2026

MicroRNA-based Regulation of Picornavirus Tropism
Published on: February 6, 2017
The highly pathogenic H5N1 influenza A virus down-regulated several cellular MicroRNAs which target viral genome
Rong Wang1, Ying-Ying Zhang1,2, Jian-Sheng Lu1
1Laboratory of Protein Engineering, Beijing Institute of Biotechnology, Beijing, China.
Abstract:
Higher and prolonged viral replication is critical for the increased pathogenesis of the highly pathogenic avian influenza (HPAI) subtype of H5N1 influenza A virus (IAV) over the lowly pathogenic H1N1 IAV strain. Recent studies highlighted the considerable roles of cellular miRNAs in host defence against viral infection. In this report, using a 3'UTR reporter system, we identified several putative miRNA target sites buried in the H5N1 virus genome. We found two miRNAs, miR-584-5p and miR-1249, that matched with the PB2 binding sequence. Moreover, we showed that these miRNAs dramatically down-regulated PB2 expression, and inhibited replication of H5N1 and H1N1 IAVs in A549 cells. Intriguingly, these miRNAs expression was differently regulated in A549 cells infected with the H5N1 and H1N1 viruses. Furthermore, transfection of miR-1249 inhibitor enhanced the PB2 expression and promoted the replication of H5N1 and H1N1 IAVs. These results suggest that H5N1 virus may have evolved a mechanism to escape host-mediated inhibition of viral replication through down-regulation of cellular miRNAs, which target its viral genome.
Insights
Highly pathogenic avian influenza (HPAI) H5N1 uses cellular miRNAs to evade host defenses. Specific miRNAs, miR-584-5p and miR-1249, inhibit viral replication by targeting the PB2 gene.
Area of Science:
- Virology
- Molecular Biology
- Immunology
Background:
- Highly pathogenic avian influenza (HPAI) H5N1 exhibits greater virulence than low pathogenic strains due to prolonged viral replication.
- Cellular microRNAs (miRNAs) play a crucial role in host defense against viral infections, including influenza A virus (IAV).
Purpose of the Study:
- To identify viral genomic targets of cellular miRNAs involved in host defense against H5N1 IAV.
- To investigate the role of specific miRNAs in regulating H5N1 and H1N1 IAV replication.
Main Methods:
- Utilized a 3'UTR reporter system to identify miRNA target sites within the H5N1 virus genome.
- Quantified miRNA expression and viral replication in A549 cells infected with H5N1 and H1N1 IAV.
- Assessed the impact of miRNA inhibitors on viral gene expression and replication.
Main Results:
- Identified miR-584-5p and miR-1249 as targeting the PB2 binding sequence of IAV.
- Demonstrated that these miRNAs significantly down-regulate PB2 expression, inhibiting both H5N1 and H1N1 IAV replication.
- Observed differential regulation of miR-584-5p and miR-1249 expression in response to H5N1 versus H1N1 infection.
- Showed that inhibiting miR-1249 enhances PB2 expression and promotes viral replication.
Conclusions:
- H5N1 virus may employ a strategy to evade host immunity by down-regulating cellular miRNAs that target its genome.
- miR-584-5p and miR-1249 are key regulators of IAV replication, offering potential targets for antiviral therapies.
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