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Updated: Feb 28, 2026

Mapping the Structure-Function Relationships of Disordered Oncogenic Transcription Factors Using Transcriptomic Analysis
Published on: June 27, 2020
ERF mutations reveal a balance of ETS factors controlling prostate oncogenesis
Rohit Bose1,2, Wouter R Karthaus1, Joshua Armenia1,3
1Human Oncology and Pathogenesis Program, Memorial Sloan Kettering Cancer Center, 1275 York Avenue, New York, New York 10065, USA.
Abstract:
Half of all prostate cancers are caused by the TMPRSS2-ERG gene-fusion, which enables androgens to drive expression of the normally silent E26 transformation-specific (ETS) transcription factor ERG in prostate cells. Recent genomic landscape studies of such cancers have reported recurrent point mutations and focal deletions of another ETS member, the ETS2 repressor factor ERF. Here we show these ERF mutations cause decreased protein stability and mostly occur in tumours without ERG upregulation. ERF loss recapitulates the morphological and phenotypic features of ERG gain in normal mouse prostate cells, including expansion of the androgen receptor transcriptional repertoire, and ERF has tumour suppressor activity in the same genetic background of Pten loss that yields oncogenic activity by ERG. In the more common scenario of ERG upregulation, chromatin immunoprecipitation followed by sequencing indicates that ERG inhibits the ability of ERF to bind DNA at consensus ETS sites both in normal and in cancerous prostate cells. Consistent with a competition model, ERF overexpression blocks ERG-dependent tumour growth, and ERF loss rescues TMPRSS2-ERG-positive prostate cancer cells from ERG dependency. Collectively, these data provide evidence that the oncogenicity of ERG is mediated, in part, by competition with ERF and they raise the larger question of whether other gain-of-function oncogenic transcription factors might also inactivate endogenous tumour suppressors.
Insights
Prostate cancer
Area of Science:
- Molecular Biology
- Genetics
- Oncology
Background:
- TMPRSS2-ERG gene-fusion drives half of prostate cancers by upregulating the ERG transcription factor.
- Recurrent mutations and deletions in ERF, an ETS family member, are observed in prostate tumors.
Purpose of the Study:
- To investigate the role of ERF mutations in prostate cancer.
- To elucidate the functional relationship between ERG and ERF in prostate cancer development and progression.
Main Methods:
- Analysis of ERF mutations and their effect on protein stability.
- Functional studies in normal mouse prostate cells and prostate cancer cell lines.
- Chromatin immunoprecipitation followed by sequencing (ChIP-seq) to assess ERF and ERG binding sites.
Main Results:
- ERF mutations decrease protein stability and are associated with tumors lacking ERG upregulation.
- ERF loss mimics ERG gain-of-function phenotypes, including androgen receptor expansion.
- ERG inhibits ERF DNA binding, and ERF can counteract ERG's oncogenic activity.
Conclusions:
- ERG's oncogenicity involves competition with and inactivation of the tumor suppressor ERF.
- ERF acts as a tumor suppressor, opposing ERG's oncogenic functions.
- This competition model may extend to other oncogenic transcription factors and endogenous tumor suppressors.
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