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Ligand Binding Sites02:40

Ligand Binding Sites

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Proteins are dynamic macromolecules that carry out a wide variety of essential processes; however, the activities of most proteins depend on their interactions with other molecules or ions, known as ligands.
Protein-ligand interactions are quite specific; even though numerous potential ligands surround a cellular protein at any given time, only a particular ligand can bind to that protein. Moreover, a ligand binds only to a dedicated area on the surface of the protein, known as the...
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Systematic Data Mining Reveals Synergistic H3R/MCHR1 Ligands.

David Schaller1, Stefanie Hagenow2, Gina Alpert2

  • 1Pharmaceutical and Medicinal Chemistry, Freie Universität Berlin, Königin-Luise-Str. 2+4, 14195 Berlin, Germany.

ACS Medicinal Chemistry Letters
|June 20, 2017
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Summary

A new data mining method identified synergistic drug targets for obesity treatment. Three melanin-concentrating hormone receptor 1 (MCHR1) modulators also target the histamine H3 receptor (H3R), offering a novel therapeutic approach.

Keywords:
Multitarget drugsfingerprintshistamine H3 receptormelanin-concentrating hormone receptor 1obesity

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Area of Science:

  • Pharmacology
  • Drug Discovery
  • Computational Chemistry

Background:

  • Obesity treatment requires identifying effective drug targets and synergistic compound actions.
  • Existing methods may not fully capture off-target effects or synergistic mechanisms.

Purpose of the Study:

  • To develop a ligand-centric data mining approach for identifying synergistic target pairs for obesity treatment.
  • To exclude compounds with detrimental off-target effects.
  • To discover novel therapeutic strategies for obesity.

Main Methods:

  • Utilized a ligand-centric data mining strategy comparing ligands with known activities against obesity targets.
  • Employed fingerprint representations for compound comparison.
  • Evaluated mechanisms of action for compounds exhibiting activity against multiple targets.
  • Performed in vitro validation of computational predictions.

Main Results:

  • Identified target pairs with potential for synergistic positive effects in obesity treatment.
  • Excluded compounds with known detrimental off-target activities.
  • Discovered that three known melanin-concentrating hormone receptor 1 (MCHR1) modulators possess previously unrecognized submicromolar affinity for the histamine H3 receptor (H3R).

Conclusions:

  • The developed ligand-centric data mining approach effectively identifies potential synergistic drug targets for obesity.
  • The dual activity of MCHR1 modulators on H3R represents a novel synergistic mechanism.
  • This finding suggests a new therapeutic avenue for obesity management by targeting both MCHR1 and H3R.