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PyMICE: APython library for analysis of IntelliCage data
Jakub M Dzik1, Alicja Puścian2, Zofia Mijakowska3
1Department of Neurophysiology Laboratory of Neuroinformatics, Nencki Institute of Experimental Biology of Polish Academy of Sciences, Poland 3 Pasteur Str., Warsaw, 02-093, Poland.
Abstract:
IntelliCage is an automated system for recording the behavior of a group of mice housed together. It produces rich, detailed behavioral data calling for new methods and software for their analysis. Here we present PyMICE, a free and open-source library for analysis of IntelliCage data in the Python programming language. We describe the design and demonstrate the use of the library through a series of examples. PyMICE provides easy and intuitive access to IntelliCage data, and thus facilitates the possibility of using numerous other Python scientific libraries to form a complete data analysis workflow.
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