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Updated: Feb 27, 2026

RNA Pull-down Procedure to Identify RNA Targets of a Long Non-coding RNA
Published on: April 10, 2018
The mutant p53-ID4 complex controls VEGFA isoforms by recruiting lncRNA MALAT1
Magdalena Pruszko1,2, Elisa Milano3, Mattia Forcato4
1Department of Molecular Biology, International Institute of Molecular and Cell Biology in Warsaw, Warsaw, Poland.
Abstract:
The abundant, nuclear-retained, metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) has been associated with a poorly differentiated and aggressive phenotype of mammary carcinomas. This long non-coding RNA (lncRNA) localizes to nuclear speckles, where it interacts with a subset of splicing factors and modulates their activity. In this study, we demonstrate that oncogenic splicing factor SRSF1 bridges MALAT1 to mutant p53 and ID4 proteins in breast cancer cells. Mutant p53 and ID4 delocalize MALAT1 from nuclear speckles and favor its association with chromatin. This enables aberrant recruitment of MALAT1 on VEGFA pre-mRNA and modulation of VEGFA isoforms expression. Interestingly, VEGFA-dependent expression signatures associate with ID4 expression specifically in basal-like breast cancers carrying TP53 mutations. Our results highlight a key role for MALAT1 in control of VEGFA isoforms expression in breast cancer cells expressing gain-of-function mutant p53 and ID4 proteins.
Insights
Metastasis-associated lung adenocarcinoma transcript 1 (MALAT1) interacts with mutant p53 and ID4 proteins, altering VEGFA isoform expression in aggressive breast cancer. This highlights MALAT1
Area of Science:
- Molecular Biology
- Cancer Research
- Genetics
Background:
- Metastasis-associated lung adenocarcinoma transcript 1 (MALAT1), a long non-coding RNA (lncRNA), is linked to aggressive mammary carcinomas.
- MALAT1 localizes to nuclear speckles and influences splicing factor activity.
Purpose of the Study:
- To investigate the role of MALAT1 in breast cancer cells with mutant p53 and ID4.
- To elucidate the mechanism by which MALAT1 affects VEGFA isoform expression.
Main Methods:
- Investigated protein-RNA interactions using immunoprecipitation and chromatin association assays.
- Analyzed VEGFA pre-mRNA splicing and isoform expression.
- Correlated gene expression signatures with specific mutations in breast cancer subtypes.
Main Results:
- Oncogenic splicing factor SRSF1 bridges MALAT1 to mutant p53 and ID4.
- Mutant p53 and ID4 cause MALAT1 delocalization and chromatin association.
- MALAT1 is aberrantly recruited to VEGFA pre-mRNA, modulating its isoforms.
- VEGFA expression signatures associate with ID4 and TP53 mutations in basal-like breast cancer.
Conclusions:
- MALAT1 plays a critical role in controlling VEGFA isoform expression in breast cancer cells harboring mutant p53 and ID4.
- This interaction highlights a novel regulatory pathway in aggressive breast cancer phenotypes.
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