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Updated: Feb 27, 2026

Utilizing Functional Genomics Screening to Identify Potentially Novel Drug Targets in Cancer Cell Spheroid Cultures
Published on: December 26, 2016
Structure-based virtual screening and molecular docking for the identification of potential multi-targeted inhibitors
Zeeshan Yousuf1, Kanzal Iman1, Nauman Iftikhar2
1Institute of Molecular Biology and Biotechnology, The University of Lahore, Lahore.
Abstract:
Breast cancer is characterized by an uncontrolled growth of cells in breast tissue. Genes that foster cell growth in breast cells are overexpressed, giving rise to breast tumors. The identification of effective inhibitors represents a rational chemopreventive strategy. The current in silico study provides a pharmacoinformatic approach for the identification of active compounds against a co-chaperone HSP90 and the human epidermal growth factor receptors EGFR and HER2/neu receptor. The elevated levels of expression of these target proteins have been documented in breast cancer. The utilization of drug-likeness filters helped to evaluate the pharmacological activity of potential lead compounds. Those fulfilling this criterion were subjected to energy minimization for 1000 steepest descent steps at a root means square gradient of 0.02 with an Amber ff12SB force field. Based on molecular docking results and binding interaction analysis, this study represents five chemical compounds (S-258282355, S-258012947, S-259417539, S-258002927, and S-259411474) that indicate high binding energies that range between -8.7 to -10.3 kcal/mol. With high cytochrome P inhibitory promiscuity activity, these multi-targeted potential hits portray not only good physiochemical interactions but also an excellent profile of absorption, distribution, metabolism, excretion, and toxicity, which hypothesizes that these compounds can be developed as anticancer drugs in the near future.
Insights
This study identified five novel chemical compounds as potential breast cancer drugs. These compounds target heat shock protein 90 (HSP90) and growth factor receptors, showing promise for future anticancer therapies.
Area of Science:
- Computational chemistry
- Pharmacoinformatics
- Oncology
Background:
- Breast cancer involves uncontrolled cell growth driven by overexpressed genes.
- Targeting heat shock protein 90 (HSP90) and growth factor receptors like EGFR and HER2/neu is a key strategy in breast cancer chemoprevention.
- Identifying effective inhibitors is crucial for developing novel chemopreventive agents.
Purpose of the Study:
- To identify potential drug candidates for breast cancer using a pharmacoinformatic approach.
- To screen compounds targeting HSP90, EGFR, and HER2/neu receptors, which are overexpressed in breast cancer.
- To evaluate the drug-likeness and binding affinities of potential lead compounds.
Main Methods:
- In silico screening and pharmacoinformatic analysis were employed.
- Drug-likeness filters were used to assess the pharmacological activity of compounds.
- Molecular docking and energy minimization (Amber ff12SB force field) were performed to analyze binding interactions.
Main Results:
- Five chemical compounds (S-258282355, S-258012947, S-259417539, S-258002927, S-259411474) exhibited high binding energies (-8.7 to -10.3 kcal/mol).
- These compounds showed multi-targeted activity against HSP90, EGFR, and HER2/neu.
- The identified compounds demonstrated favorable ADMET profiles and cytochrome P inhibitory activity.
Conclusions:
- The five identified compounds show significant potential as multi-targeted anticancer agents for breast cancer treatment.
- These compounds possess favorable drug-like properties, suggesting their viability for future drug development.
- Further research is warranted to develop these promising hits into novel chemopreventive drugs for breast cancer.
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