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Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
Published on: September 20, 2016
Next Generation Sequencing Reveals Potentially Actionable Alterations in the Majority of Patients with Lymphoid
Aaron M Goodman1,2, Michael Choi1, Matthew Wieduwilt2
1Department of Medicine, Division of Hematology/Oncology, and Center for Personalized Cancer Therapy, University of California San Diego, Moores Cancer Center.
Abstract:
Next generation sequencing (NGS) identifies alterations that may be potentially targetable by Food and Drug Administration (FDA) approved drugs and/or by available experimental agents that may not have otherwise been contemplated. Many targeted drugs have been developed for diverse solid cancers; a smaller number of genomically targeted drugs have been approved for lymphoid malignancies. We analyzed NGS results from 60 patients with various lymphoid malignancies and found a total of 224 alterations (median per patient = 3). Forty-nine patients (82%) had potentially actionable alterations using FDA-approved drugs and/or experimental therapies; only 11 patients (18%) had no theoretically actionable alterations. Only three patients (5%) had an alteration for which an approved drug in the disease is available (on-label); 45 patients (75%) had an alteration for which an approved drug is available in another disease (off-label). The median number of alterations per patient potentially actionable by an FDA-approved drug was 1. Interestingly, 19 of 60 patients (32%) had intermediate to high tumor mutational burden, which may predict response to certain immunotherapy agents. In conclusion, NGS identifies alterations that may be pharmacologically tractable in most patients with lymphoid malignancies, albeit with drugs that have usually been developed in the context of solid tumors. These observations merit expanded exploration in the clinical trials setting.
Insights
Next-generation sequencing (NGS) reveals actionable genetic alterations in most lymphoid cancer patients, often treatable with existing drugs off-label. This highlights NGS
Area of Science:
- Oncology
- Genomics
- Pharmacology
Background:
- Targeted therapies are approved for many solid tumors, but fewer for lymphoid malignancies.
- Next-generation sequencing (NGS) can identify genetic alterations for potential drug targeting.
Purpose of the Study:
- To analyze NGS results in patients with lymphoid malignancies.
- To determine the frequency of actionable alterations and potential therapeutic strategies.
Main Methods:
- Analysis of NGS data from 60 patients with various lymphoid malignancies.
- Identification of genetic alterations and assessment of their potential targetability by FDA-approved or experimental drugs.
Main Results:
- A total of 224 alterations were identified (median 3 per patient).
- 82% of patients had potentially actionable alterations.
- Only 5% had an alteration with an on-label approved drug; 75% had alterations targetable by off-label drugs.
- 32% of patients exhibited intermediate to high tumor mutational burden, suggesting potential immunotherapy response.
Conclusions:
- NGS identifies pharmacologically tractable alterations in the majority of lymphoid malignancy patients.
- Targeted therapies, often developed for solid tumors, show promise for lymphoid cancers.
- Expanded clinical trial exploration is warranted to validate these findings.

