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Related Experiment Video

Updated: Feb 27, 2026

Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

Leveraging CyVerse Resources for De Novo Comparative Transcriptomics of Underserved Non-model Organisms

Published on: May 9, 2017

Support for Taverna workflows in the VPH-Share cloud platform.

Marek Kasztelnik¹, Ernesto Coto², Marian Bubak³

¹ACC Cyfronet AGH, Krakow, Poland.

Computer Methods and Programs in Biomedicine

|July 10, 2017

Summary

This summary is machine-generated.

Researchers can now easily share and execute complex biomedical workflows using the VPH-Share platform, enhanced with Taverna workflow integration. This improves collaboration and speeds up medical applications within the Virtual Physiological Human (VPH) community.

Keywords:

Atmosphere cloud RESTful API Taverna workflow VPH-Share

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Area of Science:

Biomedical informatics
Computational biology
Virtual Physiological Human (VPH) research

Background:

The Virtual Physiological Human (VPH) community requires enhanced collaboration for complex biomedical processing tasks.
The Taverna Workflow System is widely used for orchestrating these tasks.

Purpose of the Study:

To describe VPH-Share components that support Taverna workflow creation and execution.
To explain how these components improve VPH-Share's capabilities through integration.

Main Methods:

Integration of the VPH-Share platform with the Atmosphere cloud management platform.
Development and utilization of a VPH-Share Taverna plugin.
Implementation of workflow composition and execution procedures.

Main Results:

Achieved seamless integration of VPH-Share with external components and systems.
Expanded the range of available tools for workflow development.
Successfully integrated scientific workflows from other VPH projects.
Improved execution speed for medical applications.

Conclusions:

The workflow integration offers VPH-Share users diverse composition and execution options (e.g., online, batch, remote).
The VPH-Share plugin and Atmosphere enhance VPH-Share infrastructure with flexibility, power, and usability.
Further independent evolution of components promises continued improvements for the VPH community.