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Updated: Feb 26, 2026

Identification of RNAs Engaged in Direct RNA-RNA Interaction with a Long Non-Coding RNA
Published on: July 9, 2021
Neat1 is a p53-inducible lincRNA essential for transformation suppression
Stephano S Mello1, Carolyn Sinow1, Nitin Raj1
1Department of Radiation Oncology, Stanford University School of Medicine, Stanford, California 94305, USA.
Abstract:
The p53 gene is mutated in over half of all cancers, reflecting its critical role as a tumor suppressor. Although p53 is a transcriptional activator that induces myriad target genes, those p53-inducible genes most critical for tumor suppression remain elusive. Here, we leveraged p53 ChIP-seq (chromatin immunoprecipitation [ChIP] combined with high-throughput sequencing) and RNA-seq (RNA sequencing) data sets to identify new p53 target genes, focusing on the noncoding genome. We identify Neat1, a noncoding RNA (ncRNA) constituent of paraspeckles, as a p53 target gene broadly induced by mouse and human p53 in different cell types and by diverse stress signals. Using fibroblasts derived from Neat1-/- mice, we examined the functional role of Neat1 in the p53 pathway. We found that Neat1 is dispensable for cell cycle arrest and apoptosis in response to genotoxic stress. In sharp contrast, Neat1 plays a crucial role in suppressing transformation in response to oncogenic signals. Neat1 deficiency enhances transformation in oncogene-expressing fibroblasts and promotes the development of premalignant pancreatic intraepithelial neoplasias (PanINs) and cystic lesions in KrasG12D-expressing mice. Neat1 loss provokes global changes in gene expression, suggesting a mechanism by which its deficiency promotes neoplasia. Collectively, these findings identify Neat1 as a p53-regulated large intergenic ncRNA (lincRNA) with a key role in suppressing transformation and cancer initiation, providing fundamental new insight into p53-mediated tumor suppression.
Insights
The tumor suppressor p53 regulates the noncoding RNA Neat1, which is crucial for preventing cell transformation and cancer initiation. Neat1 is not essential for apoptosis but plays a key role in suppressing oncogene-induced neoplasia.
Area of Science:
- Oncology
- Molecular Biology
- Genetics
Background:
- The p53 gene is frequently mutated in cancers, highlighting its role as a tumor suppressor.
- Identifying p53-regulated genes critical for tumor suppression is essential for understanding cancer development.
- The noncoding genome's role in p53-mediated tumor suppression is largely unexplored.
Purpose of the Study:
- To identify novel p53 target genes within the noncoding genome.
- To investigate the functional role of the noncoding RNA Neat1 in p53-mediated tumor suppression.
- To elucidate the mechanisms by which Neat1 influences transformation and cancer initiation.
Main Methods:
- Utilized p53 ChIP-seq and RNA-seq data to identify p53 target genes.
- Examined Neat1's function in Neat1-deficient mouse fibroblasts and KrasG12D-expressing mice.
- Analyzed gene expression changes in response to Neat1 loss.
Main Results:
- Identified Neat1, a noncoding RNA, as a novel p53 target gene induced by various stress signals.
- Neat1 is dispensable for p53-mediated cell cycle arrest and apoptosis but crucial for suppressing oncogene-induced transformation.
- Neat1 deficiency enhances fibroblast transformation and promotes premalignant lesions in mice, associated with global gene expression changes.
Conclusions:
- Neat1 is a p53-regulated lincRNA that plays a critical role in suppressing cellular transformation and cancer initiation.
- This study provides new insights into p53-mediated tumor suppression by highlighting the role of a noncoding RNA.
- Neat1's function in preventing neoplasia offers a potential new avenue for cancer research.
Related Concept Videos
Abnormal Proliferation
Non-LTR Retrotransposons
lncRNA - Long Non-coding RNAs
piRNA - Piwi-interacting RNAs
Negative Regulator Molecules

