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Updated: Feb 26, 2026

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Whole-Brain 3D Activation and Functional Connectivity Mapping in Mice using Transcranial Functional Ultrasound Imaging
Published on: February 24, 2021
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Structural Basis of Large-Scale Functional Connectivity in the Mouse
Joanes Grandjean1,2, Valerio Zerbi3, Joshua Henk Balsters3,4
1Institute for Biomedical Engineering, University and ETH Zürich, 8093 Zürich, Switzerland.
Summary
This study compares functional connectivity (FC) from resting-state fMRI in mice with structural connectivity. Findings show FC largely mirrors anatomical connections, supporting rs-fMRI as a translational tool for brain research.
Area of Science:
- Neuroscience
- Systems Neuroscience
- Connectomics
Background:
- Translational neuroimaging demands methods bridging species and diseases.
- Resting-state fMRI (rs-fMRI) reveals functional connectivity (FC), often mirroring structural connectivity (SC) in humans and primates.
- Investigating mouse models requires understanding if their FC aligns with SC.
Purpose of the Study:
- To compare rs-fMRI derived FC with monosynaptic structural connectivity in female mice.
- To determine if the mouse functional connectome conforms to the underlying structural connectome.
- To validate rs-fMRI as a translational tool for brain circuitry research.
Main Methods:
- rs-fMRI was used to measure FC in female mice.
- FC data was compared with the Allen Brain Connectivity Atlas's monosynaptic SC data.
- Analysis focused on interhemispheric, cortico-striatal, and cortico-thalamic pathways.
Main Results:
- FC in homotopic cortical and hippocampal areas, and cortico-striatal pathways, primarily follows monosynaptic SC.
- Striatal regions show differential FC patterns mirroring SC with the isocortex.
- Some subcortical FC, like in the striatum, may involve polysynaptic pathways and top-down cortical control.
Conclusions:
- Mouse functional connectome largely corresponds to structural connectivity, especially in cortico-cortical and cortico-striatal networks.
- This correspondence validates rs-fMRI as a translational tool for studying brain circuitry and its pathologies.
- Findings support the use of mouse models for understanding neurological and psychiatric diseases across species.

