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Updated: Feb 26, 2026

In-vitro Reconstitution of Bacterial Ubiquitination and VCP/p97-mediated Elimination
Published on: January 2, 2026
An inhibitor of ubiquitin conjugation and aggresome formation
Heeseon An1, Alexander V Statsyuk1
1Department of Chemistry , Center for Molecular Innovation and Drug Discovery , Chemistry of Life Processes Institute , Northwestern University , Silverman Hall, 2145 Sheridan Road , Evanston , Illinois 60208 , USA.
Abstract:
Proteasome inhibitors have revolutionized the treatment of multiple myeloma, and validated the therapeutic potential of the ubiquitin proteasome system (UPS). It is believed that in part, proteasome inhibitors elicit their therapeutic effect by inhibiting the degradation of misfolded proteins, which is proteotoxic and causes cell death. In spite of these successes, proteasome inhibitors are not effective against solid tumors, thus necessitating the need to explore alternative approaches. Furthermore, proteasome inhibitors lead to the formation of aggresomes that clear misfolded proteins via the autophagy-lysosome degradation pathway. Importantly, aggresome formation depends on the presence of polyubiquitin tags on misfolded proteins. We therefore hypothesized that inhibitors of ubiquitin conjugation should inhibit both degradation of misfolded proteins, and ubiquitin dependent aggresome formation, thus outlining the path forward toward more effective anticancer therapeutics. To explore the therapeutic potential of targeting the UPS to treat solid cancers, we have developed an inhibitor of ubiquitin conjugation (ABP A3) that targets ubiquitin and Nedd8 E1 enzymes, enzymes that are required to maintain the activity of the entire ubiquitin system. We have shown that ABP A3 inhibits conjugation of ubiquitin to intracellular proteins and prevents the formation of cytoprotective aggresomes in A549 lung cancer cells. Furthermore, ABP A3 induces activation of the unfolded protein response and apoptosis. Thus, similar to proteasome inhibitors MG132, bortezomib, and carfilzomib, ABP A3 can serve as a novel probe to explore the therapeutic potential of the UPS in solid and hematological malignancies.
Insights
Targeting the ubiquitin proteasome system (UPS) with novel inhibitors like ABP A3 shows promise for treating solid tumors. This approach inhibits protein degradation and aggresome formation, leading to cancer cell death.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Therapeutics
Background:
- Proteasome inhibitors are effective against multiple myeloma by targeting the ubiquitin proteasome system (UPS).
- These inhibitors are ineffective against solid tumors, necessitating alternative therapeutic strategies.
- Proteasome inhibitors can induce aggresome formation, a cellular mechanism for clearing misfolded proteins via the autophagy-lysosome pathway.
Purpose of the Study:
- To explore the therapeutic potential of targeting ubiquitin conjugation for solid cancer treatment.
- To investigate the efficacy of a novel ubiquitin conjugation inhibitor, ABP A3.
- To determine if ABP A3 can inhibit protein degradation and aggresome formation in cancer cells.
Main Methods:
- Development of ABP A3, an inhibitor targeting ubiquitin and Nedd8 E1 enzymes.
- Treatment of A549 lung cancer cells with ABP A3.
- Assessment of ubiquitin conjugation, aggresome formation, unfolded protein response activation, and apoptosis.
Main Results:
- ABP A3 effectively inhibits the conjugation of ubiquitin to intracellular proteins.
- ABP A3 prevents the formation of cytoprotective aggresomes in lung cancer cells.
- ABP A3 treatment leads to the activation of the unfolded protein response and induces apoptosis.
Conclusions:
- Targeting ubiquitin conjugation represents a promising therapeutic strategy for solid and hematological malignancies.
- ABP A3 serves as a valuable tool for investigating the role of the UPS in cancer.
- Inhibiting ubiquitin conjugation offers a potential alternative to proteasome inhibitors for cancer treatment.
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