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Cooperative Allosteric Transitions01:58

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Cooperative allosteric transitions can occur in multimeric proteins, where each subunit of the protein has its own ligand-binding site. When a ligand binds to any of these subunits, it triggers a conformational change that affects the binding sites in the other subunits; this can change the affinity of the other sites for their respective ligands. The ability of the protein to change the shape of its binding site is attributed to the presence of a mix of flexible and stable segments in the...
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Allosteric regulation of enzymes occurs when the binding of an effector molecule to a site that is different from the active site causes a change in the enzymatic activity. This alternate site is called an allosteric site, and an enzyme can contain more than one of these sites. Allosteric regulation can either be positive or negative, resulting in an increase or decrease in enzyme activity. Most enzymes that display allosteric regulation are metabolic enzymes involved in the degradation or...
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Binding sites linkages can regulate a protein's function.  For example, enzyme activity is often regulated through a feedback mechanism where the end product of the biochemical process serves as an inhibitor.
Aspartate transcarbamoylase (ATCase) is a cytosolic enzyme that catalyzes the condensation of L-aspartate and carbamoyl phosphate to  N-carbamoyl-L-aspartate. This reaction is the first step in pyrimidine biosynthesis. UTP and CTP, the end products of the pyrimidine synthesis...
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Allosteric proteins have more than one ligand binding site; the binding of a ligand to any of these sites influences the binding of ligands to the other sites. When a protein is allosteric, its binding sites are called coupled or linked.  In the case of enzymes, the site that binds to the substrate is known as the active site and the other site is known as the regulatory site. When a ligand binds to the regulatory site, this leads to conformational changes in the protein that can influence...
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Related Experiment Video

Updated: Feb 26, 2026

Spatiotemporal Control of Protein Activity through Optogenetic Allosteric Regulation
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Long Distance Modulation of Disorder-to-Order Transitions in Protein Allostery.

Jingheng Wang1, Gregory Custer1, Dorothy Beckett1

  • 1Fischell Department of Bioengineering and ‡Department of Chemistry & Biochemistry, University of Maryland , College Park, Maryland 20742, United States.

Biochemistry
|July 19, 2017
PubMed
Summary
This summary is machine-generated.

Protein disorder plays a key role in allosteric regulation. This study reveals how Escherichia coli biotin repressor (BirA) uses disorder-to-order transitions for long-distance communication, enabling gene regulation.

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Area of Science:

  • Molecular Biology
  • Biophysics
  • Structural Biology

Background:

  • Allosteric regulation is crucial for biological processes, involving communication between distant protein sites.
  • Protein intrinsic disorder is recognized for its thermodynamic contribution to allostery, but its precise mechanisms remain unclear.
  • The Escherichia coli biotin repressor (BirA) provides a model system for studying allostery, activated by biotinoyl-5'-AMP binding.

Purpose of the Study:

  • To investigate the molecular mechanisms underlying allosteric communication in the Escherichia coli biotin repressor (BirA).
  • To elucidate how disorder-to-order transitions contribute to long-distance signaling between effector binding and dimerization sites in BirA.

Main Methods:

  • Combined experimental and computational approaches were employed.
  • Double-mutant cycle analysis and thermodynamic measurements were used to assess functional coupling.
  • All-atom molecular dynamics simulations were performed to analyze structural and dynamic changes.

Main Results:

  • Functional coupling was identified between residues in disordered loops located on distant surfaces of BirA.
  • Molecular dynamics simulations demonstrated reciprocal modulation of disorder-to-order transitions.
  • This modulation occurs across the ~30 Å distance separating the effector binding and dimerization interfaces.

Conclusions:

  • Allosteric communication in BirA is mediated by the dynamic interplay of disorder-to-order transitions in distinct protein regions.
  • This study provides molecular insights into how protein disorder facilitates long-range signaling essential for transcriptional regulation.