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Updated: Feb 25, 2026

Inducing a Site Specific Replication Blockage in E. coli Using a Fluorescent Repressor Operator System
Published on: August 21, 2016
Control of replication of plasmid R1: the intergenic region between copA and repA modulates the level of expression
A Berzal-Herranz1, E G H Wagner1, R Diaz-Orejas1
1Centro de Investigaciones Biologicas (CSIC), Velázquez 144, E-28006 Madrid, Spain.Department of Microbiology. Biomedical Centre, Uppsala University, Box 581, S-751 23 Uppsala, Sweden.
Abstract:
The RepA protein of plasmid R1 is rate-limiting for initiation of R1 replication. Its synthesis is mainly regulated by interactions of the antisense RNA, CopA, with the leader region of the RepA mRNA, CopT. This work describes the characterization of several mutants with sequence alterations in the intergenic region between the copA gene and the repA reading frame. The analysis showed that most of the mutations led both to a decrease in stability of maintenance of mini-R1 derivatives and to lowered repA expression assayed in translational repA-lacZ fusion constructs. Destruction of the copA gene and replacement of the upstream region by the tac promoter in the latter constructs indicated that these mutations per se alter the expression of repA. In addition, we show that particular mutations in this region can directly affect CopA-mediated control, either by changing the kinetics of interaction of CopA RNA with the RepA mRNA and/or by modifying the activity of the copA promoter. These data indicate the importance of the region analysed in the process that controls R1 replication.
Insights
Mutations in the R1 plasmid intergenic region impact RepA protein synthesis and replication control. These findings highlight the region's importance in regulating plasmid stability and gene expression.
Area of Science:
- Molecular Biology
- Microbiology
- Genetics
Background:
- Plasmid R1 replication initiation is rate-limited by the RepA protein.
- RepA synthesis is primarily regulated by antisense RNA CopA interacting with RepA mRNA leader region CopT.
Purpose of the Study:
- Characterize mutations in the intergenic region between copA and repA.
- Investigate the impact of these mutations on RepA expression and plasmid R1 replication control.
Main Methods:
- Analysis of mini-R1 derivatives with sequence alterations.
- Assay of repA expression using translational repA-lacZ fusion constructs.
- Investigation of mutations using copA gene deletion and tac promoter replacement.
Main Results:
- Most mutations decreased mini-R1 derivative stability and lowered repA expression.
- Mutations were shown to directly alter repA expression independent of CopA.
- Specific mutations affected CopA-mediated control by altering RNA-RNA interaction kinetics or copA promoter activity.
Conclusions:
- The intergenic region between copA and repA is crucial for controlling R1 replication.
- Mutations in this region can disrupt plasmid stability and gene expression regulation.
- This region plays a significant role in the intricate control mechanisms of plasmid R1 replication.
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