Microarray dataset of transgenic rice overexpressing Abp57
Lay Wen Tan1, Cheng Seng Tan2, Zuraida A Rahman3
1Institute of Systems Biology, Universiti Kebangsaan Malaysia, UKM, 43600 Bangi, Selangor, Malaysia.
Data in Brief
|August 11, 2017
Summary
This study details a microarray experiment on transgenic rice overexpressing Auxin-binding protein 57 (Abp57). Gene expression profiles reveal insights into Abp57
Area of Science:
- Plant molecular biology
- Genomics
- Transcriptomics
Background:
- Auxin-binding proteins play crucial roles in plant growth and development.
- Understanding the function of Auxin-binding protein 57 (Abp57) is important for rice improvement.
- Gene expression profiling provides insights into molecular mechanisms.
Purpose of the Study:
- To characterize the gene expression profile of transgenic rice overexpressing Abp57.
- To identify genes regulated by Abp57 in rice.
- To provide a valuable dataset for further research in plant science.
Main Methods:
- Microarray analysis using Affymetrix GeneChip® Rice (Cn) Gene 1.0 ST Arrays.
- Comparison of gene expression between Abp57-overexpressing transgenic rice and wildtype rice.
- RNA extraction from seedling tissues.
Main Results:
- Generation of comprehensive gene expression profiles for transgenic and wildtype rice.
- Identification of differentially expressed genes in response to Abp57 overexpression.
- Raw and normalized data deposited in Gene Expression Omnibus (GEO) under accession number GSE99055.
Conclusions:
- The study provides a valuable transcriptomic resource for understanding Abp57 function in rice.
- The identified gene expression patterns can guide future research on auxin signaling and plant development.
- This dataset facilitates further investigation into the molecular mechanisms underlying Abp57 activity.
