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Updated: Feb 24, 2026

Assessment of Selective mRNA Translation in Mammalian Cells by Polysome Profiling
Published on: October 28, 2014
Cap-independent translation ensures mTOR expression and function upon protein synthesis inhibition
Ana Marques-Ramos1,2, Marco M Candeias1,3, Juliane Menezes1,2
1Departamento de Genética Humana, Instituto Nacional de Saúde Doutor Ricardo Jorge, 1649-016 Lisboa, Portugal.
Abstract:
The mechanistic/mammalian target of rapamycin (mTOR) is a conserved serine/threonine kinase that integrates cellular signals from the nutrient and energy status to act, namely, on the protein synthesis machinery. While major advances have emerged regarding the regulators and effects of the mTOR signaling pathway, little is known about the regulation of mTOR gene expression. Here, we show that the human mTOR transcript can be translated in a cap-independent manner, and that its 5' untranslated region (UTR) is a highly folded RNA scaffold capable of binding directly to the 40S ribosomal subunit. We further demonstrate that mTOR is able to bypass the cap requirement for translation both in normal and hypoxic conditions. Moreover, our data reveal that the cap-independent translation of mTOR is necessary for its ability to induce cell-cycle progression into S phase. These results suggest a novel regulatory mechanism for mTOR gene expression that integrates the global protein synthesis changes induced by translational inhibitory conditions.
Insights
The study reveals that the human mTOR gene can be translated without a cap, utilizing its 5' untranslated region (UTR) to bind the ribosome. This cap-independent translation is crucial for cell-cycle progression.
Area of Science:
- Molecular Biology
- Cell Biology
- Biochemistry
Background:
- The mechanistic/mammalian target of rapamycin (mTOR) pathway regulates protein synthesis in response to nutrient and energy levels.
- While mTOR signaling is well-studied, the regulation of mTOR gene expression remains largely unknown.
Purpose of the Study:
- To investigate the mechanisms regulating human mTOR gene expression.
- To explore the role of the 5' untranslated region (UTR) in mTOR translation.
- To understand mTOR's function in cell-cycle progression under varying conditions.
Main Methods:
- Analysis of human mTOR transcript translation.
- RNA structure probing of the 5' UTR.
- Ribosomal subunit binding assays.
- Cell-cycle progression analysis under normal and hypoxic conditions.
Main Results:
- The human mTOR transcript undergoes cap-independent translation.
- The 5' UTR of mTOR acts as an RNA scaffold, directly binding the 40S ribosomal subunit.
- mTOR bypasses the cap requirement for translation in both normal and hypoxic states.
- Cap-independent mTOR translation is essential for inducing cell-cycle progression into S phase.
Conclusions:
- A novel regulatory mechanism for mTOR gene expression is proposed, involving cap-independent translation.
- This mechanism integrates global protein synthesis regulation with mTOR activity, particularly under stress.
- The findings highlight the importance of translational control in cellular processes like cell-cycle progression.
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