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Updated: Feb 24, 2026

Pattern-based Search of Epigenomic Data Using GeNemo
Published on: October 8, 2017
The GenePattern Notebook Environment
Michael Reich1, Thorin Tabor1, Ted Liefeld1
1School of Medicine, University of California, San Diego, La Jolla, CA, USA.
Abstract:
Interactive analysis notebook environments promise to streamline genomics research through interleaving text, multimedia, and executable code into unified, sharable, reproducible "research narratives." However, current notebook systems require programming knowledge, limiting their wider adoption by the research community. We have developed the GenePattern Notebook environment (http://www.genepattern-notebook.org), to our knowledge the first system to integrate the dynamic capabilities of notebook systems with an investigator-focused, easy-to-use interface that provides access to hundreds of genomic tools without the need to write code.
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