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Updated: Feb 24, 2026

Author Spotlight: Quantitative Detection of DNA Protein Crosslinks and Their Post-Translational Modifications
Published on: April 21, 2023
The MukB-topoisomerase IV interaction is required for proper chromosome compaction
Rupesh Kumar1, Pearl Nurse1, Soon Bahng1
1From the Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, New York 10065.
Abstract:
The bacterial condensin MukB and the cellular decatenating enzyme topoisomerase IV interact. This interaction stimulates intramolecular reactions catalyzed by topoisomerase IV, supercoiled DNA relaxation, and DNA knotting but not intermolecular reactions such as decatenation of linked DNAs. We have demonstrated previously that MukB condenses DNA by sequestering negative supercoils and stabilizing topologically isolated loops in the DNA. We show here that the MukB-topoisomerase IV interaction stabilizes MukB on DNA, increasing the extent of DNA condensation without increasing the amount of MukB bound to the DNA. This effect does not require the catalytic activity of topoisomerase IV. Cells carrying a mukB mutant allele that encodes a protein that does not interact with topoisomerase IV exhibit severe nucleoid decompaction leading to chromosome segregation defects. These findings suggest that the MukB-topoisomerase IV complex may provide a scaffold for DNA condensation.
Insights
The bacterial condensin MukB protein interacts with topoisomerase IV, enhancing DNA condensation and loop stabilization. This interaction is crucial for proper chromosome segregation, as mutations impairing it cause severe DNA decompaction.
Area of Science:
- Bacterial cell biology
- Molecular genetics
- DNA topology
Background:
- The bacterial condensin MukB protein plays a key role in DNA condensation.
- Topoisomerase IV is an enzyme responsible for decatenating linked DNA molecules.
Purpose of the Study:
- To investigate the functional consequences of the interaction between MukB and topoisomerase IV.
- To elucidate the role of this complex in DNA condensation and chromosome segregation.
Main Methods:
- Biochemical assays to study DNA relaxation and knotting.
- Analysis of DNA condensation in bacterial cells with varying MukB and topoisomerase IV interactions.
- Genetic analysis of *mukB* mutant alleles.
Main Results:
- The interaction between MukB and topoisomerase IV enhances MukB-mediated DNA condensation without increasing MukB binding.
- This stabilization effect does not depend on topoisomerase IV's catalytic activity.
- Mutations preventing MukB-topoisomerase IV interaction lead to severe nucleoid decompaction and chromosome segregation defects.
Conclusions:
- The MukB-topoisomerase IV complex acts as a scaffold, promoting extensive DNA condensation.
- This complex is essential for maintaining genome integrity and ensuring proper chromosome segregation in bacteria.
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