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Analyzing Melts and Fluids from Ab Initio Molecular Dynamics Simulations with the UMD Package
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Reactive molecular dynamics models from ab initio molecular dynamics data using relative entropy minimization.

Christopher Arntsen1, Chen Chen1,2, Gregory A Voth1

  • 1Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, 60637 USA.

Chemical Physics Letters
|August 29, 2017
PubMed
Summary

We developed new multiscale reactive molecular dynamics (MS-RMD) models for hydrated excess protons in water. These models accurately reproduce ab initio data, enabling efficient simulations of proton transfer.

Keywords:
Reactive molecular dynamicsacidshydrated excess protonmultiscale modelingrelative entropy minimization

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Area of Science:

  • Computational Chemistry
  • Chemical Physics
  • Materials Science

Background:

  • Simulating proton transfer in water is crucial for understanding chemical reactions and biological processes.
  • Accurate molecular dynamics (MD) force fields are essential for reliable simulations.
  • Developing efficient yet accurate reactive force fields remains a challenge.

Purpose of the Study:

  • To develop novel multiscale reactive molecular dynamics (MS-RMD) models for the hydrated excess proton in water.
  • To validate the accuracy of the developed MS-RMD models against high-level ab initio molecular dynamics (AIMD) data.
  • To demonstrate a new method for rapidly generating accurate and efficient reactive MD force fields.

Main Methods:

  • Development of two new MS-RMD models using data from AIMD simulations.
  • Utilizing an algorithm based on relative entropy minimization for model development.
  • Validation of MS-RMD models by comparing potential of mean force and radial distribution functions with AIMD results.

Main Results:

  • The developed MS-RMD models accurately reproduce the potential of mean force along the proton transfer coordinate.
  • Radial distribution functions from MS-RMD simulations faithfully match those obtained from AIMD.
  • The relative entropy minimization algorithm successfully generated accurate and efficient reactive MD force fields.

Conclusions:

  • The new MS-RMD models provide a computationally efficient and accurate representation of the hydrated excess proton in water.
  • The relative entropy minimization approach is a powerful tool for developing high-performance reactive force fields.
  • These findings advance the simulation capabilities for studying proton transfer phenomena in aqueous systems.