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Soil Sampling and Isolation of Entomopathogenic Nematodes Steinernematidae, Heterorhabditidae
Published on: July 11, 2014
Nocardioides thalensis sp. nov., isolated from a desert
Inam Ullah Khan1, Firasat Hussain1, Neeli Habib1
1Yunnan Institute of Microbiology, School of Life Sciences, Yunnan University, Kunming 650091, PR China.
A novel actinobacterial strain, Nocardioides thalensis NCCP-696T, was discovered in Pakistan's Thal desert. This bacterium exhibits unique phylogenetic and chemotaxonomic features, establishing it as a new species within the Nocardioides genus.
Area of Science:
- Microbiology
- Bacteriology
- Taxonomy
Background:
- Actinobacteria are crucial in various environments.
- The genus Nocardioides comprises diverse species with significant ecological roles.
- Exploring novel bacterial isolates aids in understanding microbial diversity.
Purpose of the Study:
- To isolate and characterize a novel actinobacterial strain from the Thal desert.
- To determine the taxonomic position of the novel strain using a polyphasic approach.
- To propose a new species designation based on comprehensive data.
Main Methods:
- Polyphasic taxonomy including 16S rRNA gene sequencing and DNA-DNA hybridization.
- Phenotypic characterization (Gram staining, motility, colony color, biochemical tests).
- Chemotaxonomic analyses (fatty acid profiling, cell-wall composition, polar lipids, menaquinones, DNA G+C content).
Main Results:
- Strain NCCP-696T showed 98.2% 16S rRNA gene sequence similarity to Nocardioides panacisoliGsoil 346T.
- Phenotypic and chemotaxonomic data supported its distinctness from known Nocardioides species.
- DNA-DNA hybridization value was 56.3±1.4% with N. panacisoliGsoil 346T.
- Predominant fatty acids included Iso-C16:0, C18:1ω9c, C17:1ω8c, and C17:0.
- Major menaquinone was MK-8(H4) (98.7%).
- DNA G+C content was 71.6 mol%.
Conclusions:
- Strain NCCP-696T represents a novel species within the genus Nocardioides.
- The proposed name for this new species is Nocardioides thalensis sp. nov.
- The type strain is NCCP-696T (=DSM 103833T=CCTCC AB 2016296T).
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