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Updated: Feb 23, 2026

Investigating Flagella-Driven Motility in Escherichia coli by Applying Three Established Techniques in a Series
Published on: May 10, 2020
A putative spermidine synthase interacts with flagellar switch protein FliM and regulates motility in Helicobacter
Huawei Zhang1, Kwok Ho Lam1, Wendy Wai Ling Lam1
1Centre for Protein Science and Crystallography, School of Life Sciences, The Chinese University of Hong Kong, Hong Kong.
Abstract:
The flagellar motor is an important virulence factor in infection by many bacterial pathogens. Motor function can be modulated by chemotactic proteins and recently appreciated proteins that are not part of the flagellar or chemotaxis systems. How these latter proteins affect flagellar activity is not fully understood. Here, we identified spermidine synthase SpeE as an interacting partner of switch protein FliM in Helicobacter pylori using pull-down assay and mass spectrometry. To understand how SpeE contributes to flagellar motility, a speE-null mutant was generated and its motility behavior was evaluated. We found that deletion of SpeE did not affect flagellar formation, but induced clockwise rotation bias. We further determined the crystal structure of the FliM-SpeE complex at 2.7 Å resolution. SpeE dimer binds to FliM with micromolar binding affinity, and their interaction is mediated through the β1' and β2' region of FliM middle domain. The FliM-SpeE binding interface partially overlaps with the FliM surface that interacts with FliG and is essential for proper flagellar rotational switching. By a combination of protein sequence conservation analysis and pull-down assays using FliM and SpeE orthologues in E. coli, our data suggest that FliM-SpeE association is unique to Helicobacter species.
Insights
Spermidine synthase SpeE interacts with the flagellar switch protein FliM in Helicobacter pylori, altering motor rotation. This interaction, unique to Helicobacter, impacts bacterial virulence and motility.
Area of Science:
- Microbiology
- Bacterial Pathogenesis
- Molecular Biology
Background:
- The bacterial flagellar motor is crucial for motility and virulence.
- Proteins outside flagellar and chemotaxis systems can modulate motor function.
- The precise mechanisms of these modulations are not fully understood.
Purpose of the Study:
- To identify novel regulators of flagellar motor function in Helicobacter pylori.
- To investigate the role of spermidine synthase (SpeE) in flagellar motility.
- To elucidate the structural basis of the SpeE-FliM interaction.
Main Methods:
- Pull-down assay and mass spectrometry to identify interacting proteins.
- Generation and analysis of a speE-null mutant for motility assessment.
- X-ray crystallography to determine the structure of the FliM-SpeE complex.
Main Results:
- Spermidine synthase (SpeE) was identified as a FliM interacting partner.
- SpeE deletion resulted in clockwise rotation bias without affecting flagellar formation.
- Crystal structure revealed SpeE dimer binding to FliM's middle domain, overlapping with FliG interaction sites.
- FliM-SpeE association appears unique to Helicobacter species.
Conclusions:
- SpeE modulates Helicobacter pylori flagellar motor function by interacting with FliM.
- This interaction influences the direction of flagellar rotation, impacting bacterial motility.
- The FliM-SpeE interaction is a species-specific mechanism potentially contributing to Helicobacter pathogenesis.
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