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Targeted Next-generation Sequencing and Bioinformatics Pipeline to Evaluate Genetic Determinants of Constitutional Disease
Published on: April 4, 2018
Associations between LMO1 gene polymorphisms and Wilms' tumor susceptibility
Guo-Chang Liu1, Zhen-Jian Zhuo2, Shi-Bo Zhu1
1Department of Pediatric Urology, Department of Pediatric Surgery, Guangzhou Institute of Pediatrics, Guangzhou Women and Children's Medical Center, Guangzhou Medical University, Guangzhou 510623, Guangdong, China.
Genetic variations in the LIM domain only 1 (LMO1) gene are associated with childhood Wilms' tumor risk. Specific LMO1 polymorphisms, particularly rs110419, show a protective effect, especially in males, warranting further investigation.
Area of Science:
- Genetics
- Pediatric Oncology
- Molecular Biology
Background:
- Wilms' tumor is the most common kidney cancer in children.
- Genome-wide association studies have implicated the LIM domain only 1 (LMO1) gene in oncogenesis.
Purpose of the Study:
- To investigate the association between LMO1 gene polymorphisms and Wilms' tumor susceptibility.
- To identify specific LMO1 variants that may influence Wilms' tumor risk.
Main Methods:
- A hospital-based case-control study involving 145 Wilms' tumor patients and 531 cancer-free children.
- Genotyping of four LMO1 polymorphisms (rs110419, rs4758051, rs10840002, rs204938) using Taqman methodology.
- Statistical analysis using odds ratios (ORs) and 95% confidence intervals (CIs).
Main Results:
- The rs110419 AG polymorphism demonstrated a protective effect against Wilms' tumor (adjusted OR = 0.62).
- Carrying 1-4 risk genotypes significantly increased Wilms' tumor risk (adjusted OR = 1.84).
- The protective effect of rs110419 AG/GG was more pronounced in males, and risk genotype associations were observed in older children (>18 months), females, and those in advanced stages (III+IV).
Conclusions:
- LMO1 gene polymorphisms may play a role in Wilms' tumor susceptibility.
- The findings suggest potential sex-specific and age-specific effects of LMO1 variants on Wilms' tumor risk.
- Further validation in larger, diverse populations is recommended.
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