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Updated: Feb 23, 2026

Implementation of In Vitro Drug Resistance Assays: Maximizing the Potential for Uncovering Clinically Relevant Resistance Mechanisms
Published on: December 9, 2015
Structural basis of mutant-selectivity and drug-resistance related to CO-1686
Xiao-E Yan1,2, Su-Jie Zhu1,2, Ling Liang1,2
1Institute of Systems Biomedicine, School of Basic Medical Sciences, Peking University Health Science Center, Beijing 100191, China.
Abstract:
Non-small-cell lung cancers (NSCLCs) caused by activating mutations in the kinase domain of epidermal growth factor receptor (EGFR) initially respond to first-generation reversible drugs gefitinib and erlotinib. However, clinical efficacy is limited due to the development of drug-resistance that in more than half of the cases are driven by the secondary T790M mutation. CO-1686 is one of the third generation irreversible inhibitors that inhibits EGFR activating mutants, including those with concurrent T790M, while avoiding the off-target toxicity owing to inhibition of wild-type EGFR in treating EGFR mutation-positive NSCLCs. Despite the remarkable success, the experimentally determined structure of this agent in complex with EGFR T790M remains unknown. In this study, we determined crystal structures of EGFR T790M or L858R mutants covalently bound by CO-1686. Based on these structural data, we can explain why CO-1686 irreversibly inhibits EGFR and selectively prefers T790M, which may help improving this or similar compounds, and explain why EGFR L718Q and L844V mutations incur resistance to this agent.
Insights
Third-generation irreversible inhibitor CO-1686 targets EGFR T790M mutations in non-small-cell lung cancer. Structural analysis reveals its mechanism of action and resistance pathways, aiding future drug development.
Area of Science:
- Molecular Biology
- Structural Biology
- Oncology
Background:
- Non-small-cell lung cancer (NSCLC) with activating epidermal growth factor receptor (EGFR) mutations initially responds to reversible inhibitors like gefitinib and erlotinib.
- Drug resistance, often due to the T790M mutation, limits long-term clinical efficacy.
- Third-generation irreversible inhibitors, such as CO-1686, are designed to overcome resistance by targeting mutant EGFR, including T790M, while sparing wild-type EGFR.
Purpose of the Study:
- To determine the experimentally resolved crystal structure of EGFR T790M in complex with CO-1686.
- To elucidate the structural basis for CO-1686's irreversible inhibition and selectivity for the T790M mutant.
- To understand the structural mechanisms underlying resistance to CO-1686 conferred by EGFR L718Q and L844V mutations.
Main Methods:
- Crystallization of EGFR T790M and L858R mutants.
- Determination of crystal structures of these mutants covalently bound to CO-1686.
- Structural analysis to interpret binding modes and resistance mechanisms.
Main Results:
- The crystal structures of EGFR T790M and L858R mutants covalently bound by CO-1686 were successfully determined.
- Structural data provide insights into the irreversible inhibition mechanism of CO-1686 against EGFR mutants.
- The study explains the selective inhibition of T790M and identifies structural factors contributing to resistance from L718Q and L844V mutations.
Conclusions:
- The determined structures provide a molecular understanding of CO-1686's efficacy and selectivity in EGFR-mutated NSCLC.
- These findings can guide the design of improved irreversible EGFR inhibitors for cancer therapy.
- Understanding resistance mutations is crucial for developing next-generation targeted therapies.
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