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Related Concept Videos

Inorganic Nitrogen Assimilation01:22

Inorganic Nitrogen Assimilation

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Nitrogen is an essential element in biological systems, forming a crucial component of proteins, nucleic acids, and other cellular constituents. Many bacteria and archaea acquire nitrogen in the form of nitrate (NO₃⁻) or ammonia (NH₃), which are then assimilated into biomolecules through specific enzymatic pathways.Assimilatory Nitrate ReductionWhen nitrate enters the cell, it undergoes a two-step reduction process known as assimilatory nitrate reduction. Initially, the enzyme...
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Protein Complex Assembly02:41

Protein Complex Assembly

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Proteins can form homomeric complexes with another unit of the same protein or heteromeric complexes with different types.  Most protein complexes self-assemble spontaneously via ordered pathways, while some proteins need assembly factors that guide their proper assembly. Despite the crowded intracellular environment, proteins usually interact with their correct partners and form functional complexes.
Many viruses self-assemble into a fully functional unit using the infected host cell to...
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The Nitrogen Cycle01:49

The Nitrogen Cycle

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Nitrogen atoms, present in all proteins and DNA, are recycled between abiotic and biotic components of the ecosystem. However, the primary form of nitrogen on Earth is nitrogen gas, which cannot be used by most animals and plants. Thus, nitrogen gas must first be converted into a usable form by nitrogen-fixing bacteria before it can be cycled through other living organisms. The use of nitrogen-containing fertilizers and animal waste products in human agriculture has greatly influenced the...
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Preparation of Nitriles01:12

Preparation of Nitriles

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One of the common methods to prepare nitriles is the dehydration of amides. This method requires strong dehydrating agents like phosphorous pentoxide or boiling acetic anhydride for converting amides to nitriles. Another reagent namely, thionyl chloride also accomplishes the dehydration of amides, where amide acts as a nucleophile. The first step of the mechanism involves the nucleophilic attack by the amide on the thionyl chloride to form an intermediate. In the next step, the electron pairs...
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Ribosomal RNA Synthesis02:53

Ribosomal RNA Synthesis

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Ribosome synthesis is a highly complex and coordinated process involving more than 200 assembly factors. The synthesis and processing of ribosomal components occurs not only in the nucleolus but also in the nucleoplasm and the cytoplasm of eukaryotic cells.
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Genome Annotation and Assembly03:36

Genome Annotation and Assembly

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The genome refers to all of the genetic material in an organism. It can range from a few million base pairs in microbial cells to several billion base pairs in many eukaryotic organisms. Genome assembly refers to the process of taking the DNA sequencing data and putting it all back together in a correct order to create a close representation of the original genome. This is followed by the identification of functional elements on the newly assembled genome, a process called genome annotation.
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Related Experiment Video

Updated: Feb 23, 2026

Measurement of the Potential Rates of Dissimilatory Nitrate Reduction to Ammonium Based on 14NH4+/15NH4+ Analyses via Sequential Conversion to N2O
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Measurement of the Potential Rates of Dissimilatory Nitrate Reduction to Ammonium Based on 14NH4+/15NH4+ Analyses via Sequential Conversion to N2O

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Nitrogenase Assembly: Strategies and Procedures.

Nathaniel S Sickerman1, Yilin Hu1, Markus W Ribbe1

  • 1University of California, Irvine, Irvine, CA, United States.

Methods in Enzymology
|September 9, 2017
PubMed
Summary

This study details methods for growing Azotobacter vinelandii and genetically modifying it to understand nitrogenase assembly. These techniques aid in studying biological nitrogen fixation and ammonia production.

Keywords:
AssemblyAzotobacter vinelandiiDiazotrophFe proteinGeneticsMoFe proteinNitrogen fixationNitrogenasenif

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Area of Science:

  • Biochemistry
  • Microbiology
  • Enzymology

Background:

  • Nitrogenase is crucial for biological nitrogen fixation, converting atmospheric dinitrogen to ammonia.
  • Understanding the assembly of nitrogenase metallocenters is key to its catalytic function.
  • Azotobacter vinelandii is a model organism for studying nitrogenase due to its culturability and genetic tractability.

Purpose of the Study:

  • To provide essential protocols for the study of nitrogenase assembly and function.
  • To outline methods for culturing and genetically manipulating Azotobacter vinelandii.
  • To describe techniques for nitrogenase protein purification and activity assays.

Main Methods:

  • Culturing of Azotobacter vinelandii.
  • Recombinant transformation and protein expression in A. vinelandii.
  • Purification of nitrogenase proteins.
  • Enzyme activity assays for substrate reduction.

Main Results:

  • Established protocols for A. vinelandii manipulation and nitrogenase expression.
  • Developed methods for purifying nitrogenase components.
  • Validated assays for assessing nitrogenase catalytic activity.

Conclusions:

  • The described methods provide a robust framework for investigating nitrogenase assembly and catalysis.
  • These protocols facilitate research into biological nitrogen fixation mechanisms.
  • Further studies can utilize these methods to explore nitrogenase function and engineering.