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Updated: Feb 23, 2026

Simultaneous Laryngopharyngeal and Conventional Esophageal pH Monitoring
Published on: December 14, 2020
Association Between CYP2C19*17 Alleles and pH Probe Testing Outcomes in Children With Symptomatic Gastroesophageal
James P Franciosi1, Edward B Mougey2, Andre Williams3
1Division of Gastroenterology, Nemours Children's Hospital, Orlando, FL, USA.
Insights
Proton pump inhibitor (PPI) dosing for pediatric gastroesophageal reflux disease (GERD) may be improved by considering CYP2C19 genetic variants. Children with CYP2C19*17 alleles showed increased acid exposure, suggesting genotype-guided dosing is needed.
Area of Science:
- Pharmacogenomics
- Pediatric Gastroenterology
- Gastrointestinal Motility
Background:
- Esophageal pH monitoring is key for diagnosing gastroesophageal reflux disease (GERD).
- Proton pump inhibitor (PPI) resistance in GERD may link to CYP2C19 genetic variations.
- Current pediatric PPI dosing ignores CYP2C19 variants, potentially causing underdosing and misinterpreting treatment failure.
Purpose of the Study:
- To investigate the association between CYP2C19*17 alleles and esophageal acid exposure outcomes in children with suspected GERD undergoing pH testing.
- To determine if CYP2C19 genetic variants influence PPI efficacy in pediatric GERD patients.
Main Methods:
- Retrospective cohort study of 74 children (0.71-17.1 years) with stored tissue samples and prior esophageal pH testing on PPI therapy.
- Genotyping for common CYP2C19 alleles, categorizing participants into CYP2C19*17 carriers (cases) versus controls.
- Analysis of pH probe acid exposure metrics (time and percentage with pH < 4) in relation to CYP2C19*17 allelic status, controlling for confounders.
Main Results:
- Children carrying CYP2C19*17 alleles without loss-of-function variants showed significantly longer times (76.46 vs 33.47 min, P=.03) and higher percentage of time (5.71 vs 2.67 min, P=.04) with esophageal pH < 4 compared to controls.
- These associations remained significant after adjusting for test duration, PPI dose, and race in multiple-regression models.
- Findings suggest CYP2C19*17 allele carriers experience greater acid exposure despite PPI therapy.
Conclusions:
- The CYP2C19*17 allele is associated with increased esophageal acid exposure in children with GERD symptoms on PPI therapy.
- Current PPI dosing strategies may be suboptimal for pediatric GERD patients with specific CYP2C19 genotypes.
- Genotype-guided PPI dosing before esophageal pH testing could optimize treatment for children carrying CYP2C19*17 alleles.
Abstract:
Esophageal pH monitoring remains a primary diagnostic tool for detecting gastroesophageal reflux disease (GERD). GERD that is refractory to proton pump inhibitor (PPI) medications may be related to CYP2C19 variants. Current PPI dosing practices in children do not take into account CYP2C19 allelic variants, which may lead to underdosing and subsequently to a misperception of PPI therapy failure. We hypothesized that pH probe acid exposure outcomes associate with CYP2C19*17 alleles among children with clinical concern for GERD. We identified a retrospective cohort of 74 children (age range 0.71-17.1 years, mean 8.5, SD 4.6) with stored endoscopic tissue samples and who had also undergone esophageal pH testing while on PPI therapy. These individuals were genotyped for common CYP2C19 alleles and were dichotomized to either CYP2C19*17 allelic carriers without corresponding loss of function alleles as cases vs controls. Associations between pH probe acid exposure outcomes and CYP2C19*17 alleles were investigated. Compared to controls, children who carry CYP2C19*17 alleles without corresponding loss-of-function alleles demonstrated statistically significant longer times with pH < 4 (76.46 vs 33.47 minutes, P = .03); and higher percent of time with pH < 4.0 (5.71 vs 2.67 minutes, P = .04). These findings remained statistically significant using multiple-regression modeling with test duration, PPI dose, and race as confounding variables. PPI therapy in children with *17 alleles may be better optimized with CYP2C19 genotype-guided dosing prior to pH probe testing.
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