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Updated: Feb 23, 2026

Deacetylation Assays to Unravel the Interplay between Sirtuins SIRT2 and Specific Protein-substrates
Published on: February 27, 2016
SIRT7 deacetylates DDB1 and suppresses the activity of the CRL4 E3 ligase complexes
1The Fifth People's Hospital of Shanghai and the Molecular and Cell Biology Research Lab of the Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
Abstract:
Cullin 4 (CUL4) and small ring finger protein ROC1 assemble to form E3 ubiquitin ligase (CRL4) complexes. CUL4 interacts with WD-40 proteins through the adaptor protein DNA damage-binding protein 1 (DDB1) to target substrates for ubiquitylation. Very little is known on how the CUL4 and DDB1 interaction is regulated. Here, we show that DDB1 is acetylated and acetylation promotes DDB1 binding to CUL4. We also identify nucleolar sirtuin 7 (SIRT7) as a major deacetylase that negatively regulates DDB1-CUL4 interaction. Following inhibition of nucleolar function by actinomycin D or 5-fluorouracil treatment or knocking down the gene for the RNA polymerase I component UBF, SIRT7 is mobilized from the nucleolus to the nucleoplasm and promotes DDB1 deacetylation, leading to decreased DDB1-CUL4 association and CRL4 activity. This results in the accumulation or activation of CRL4 substrates including LATS1 and p73, which contribute to cell apoptosis induced by actinomycin D and 5-fluorouracil. Our study uncovers a novel regulation of CRL4 E3 ligase complexes.
Insights
Acetylation of DNA damage-binding protein 1 (DDB1) enhances its binding to Cullin 4 (CUL4), forming E3 ligase complexes. Nucleolar sirtuin 7 (SIRT7) deacetylates DDB1, reducing CRL4 activity and promoting apoptosis.
Area of Science:
- Cellular Biology
- Molecular Biology
- Biochemistry
Background:
- Cullin 4 (CUL4) and ROC1 form E3 ubiquitin ligase (CRL4) complexes.
- CUL4-DDB1 interaction targets substrates for ubiquitylation, but its regulation is poorly understood.
Purpose of the Study:
- To investigate the regulation of the DDB1-CUL4 interaction.
- To identify factors influencing CRL4 E3 ligase complex activity.
Main Methods:
- Demonstrated DDB1 acetylation and its effect on CUL4 binding.
- Identified SIRT7 as a DDB1 deacetylase.
- Observed SIRT7 mobilization and DDB1 deacetylation upon nucleolar stress (actinomycin D, 5-fluorouracil, UBF knockdown).
Main Results:
- Acetylation promotes DDB1 binding to CUL4.
- SIRT7 deacetylates DDB1, decreasing DDB1-CUL4 association and CRL4 activity.
- Nucleolar stress induces SIRT7 relocation, leading to DDB1 deacetylation and CRL4 inhibition.
- CRL4 substrate accumulation (LATS1, p73) contributes to apoptosis.
Conclusions:
- Uncovered a novel regulatory mechanism for CRL4 E3 ligase complexes involving DDB1 acetylation and SIRT7.
- Demonstrated the role of nucleolar function and SIRT7 in controlling CRL4 activity and substrate levels.
- Linked CRL4 regulation to apoptosis induction by specific treatments.
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