Related Experiment Video
Updated: Feb 23, 2026

Isolation and Cultivation of Neural Progenitors Followed by Chromatin-Immunoprecipitation of Histone 3 Lysine 79 Dimethylation Mark
Published on: January 26, 2018
KDM4A regulates HIF-1 levels through H3K9me3
Grzegorz Dobrynin1, Tom E McAllister2, Katarzyna B Leszczynska1
1Cancer Research UK and Medical Research Council Oxford Institute for Radiation Oncology, Department of Oncology, The University of Oxford, Oxford, OX3 7DQ, UK.
The histone demethylase KDM4A regulates aggressive tumor cell behavior by controlling Hypoxia-Inducible Factor-1α (HIF-1α) levels. Depleting KDM4A reduces HIF-1α, decreasing tumor invasion and migration.
Area of Science:
- Molecular Biology
- Cancer Research
- Epigenetics
Background:
- Hypoxia (low oxygen) in solid tumors drives aggressive phenotypes and therapy resistance.
- Hypoxia-Inducible Factors (HIFs) mediate gene expression changes under hypoxia.
- Histone demethylases are implicated in regulating hypoxic signaling.
Purpose of the Study:
- To investigate the role of histone demethylase KDM4A in regulating HIF-1α.
- To determine how KDM4A activity influences tumor aggressiveness under hypoxia.
Main Methods:
- Depletion or inactivation of KDM4A in cancer cells.
- Analysis of H3K9me3 levels at the HIF-1α locus.
- Quantification of HIF-1α mRNA and protein stabilization.
- Assessment of tumor cell invasion, migration, and oxygen consumption.
Main Results:
- KDM4A depletion leads to accumulation of the repressive chromatin mark H3K9me3 at the HIF-1α locus.
- Reduced KDM4A activity decreases HIF-1α mRNA and protein stabilization.
- Loss of KDM4A diminishes HIF-1α-mediated transcription, invasion, migration, and oxygen consumption.
- KDM4A's effect on HIF-1α is most pronounced under mild hypoxia.
Conclusions:
- KDM4A directly controls HIF-1α levels via epigenetic regulation.
- KDM4A activity is crucial for maintaining the aggressive characteristics of hypoxic tumors.
- Targeting KDM4A may offer a therapeutic strategy to reduce tumor aggressiveness.
Related Concept Videos
Histone Modification
Acetylation
The enzyme histone acetyltransferase adds acetyl group to the histones. Another enzyme, histone...
Histone Modification
Master Transcription Regulators
Chromatin Structure Regulates pre-mRNA Processing
The chromatin structure, especially...
Spreading of Chromatin Modifications
Writers
The writer...
Heterochromatin
Constitutive heterochromatin: It is a highly compact region of chromatin that is mostly concentrated in the centromere and telomere. Unlike euchromatin, the amino acid at...

