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Updated: Feb 22, 2026

Inducible and Reversible Dominant-negative DN Protein Inhibition
Published on: January 7, 2019
Induced prodrug activation by conditional protein degradation
Andrew S Gaynor1, Wilfred Chen1
1Department of Chemical and Biomolecular Engineering, University of Delaware, Newark, USA.
Abstract:
Enzyme prodrug therapies hold potential as a targeted treatment option for cancer patients. However, off-target effects can be detrimental to patient health and represent a safety concern. This concern can be alleviated by including a failsafe mechanism that can abort the therapy in healthy cells. This feature can be included in enzyme prodrug therapies by use of conditional degradation tags, which degrade the protein unless stabilized. We call this process Degradation-Directed Enzyme Prodrug Therapy (DDEPT). Herein, we use traceless shielding (TShld), a mechanism that degrades a protein of interest unless it is rescued by the addition of rapamycin, to test this concept. We demonstrated that TShld rapidly yielded only native protein products within 1h after rapamycin addition. The rapid protection phenotype of TShld was further adapted to rescue yeast cytosine deaminase, a prodrug converting enzyme. As expected, cell viability was adversely affected only in the presence of both 5-fluorocytosine (5-FC) and rapamycin. We believe that the DDEPT system can be easily combined with other targeting strategies to further increase the safety of prodrug therapies.
Insights
Degradation-Directed Enzyme Prodrug Therapy (DDEPT) uses a failsafe mechanism to enhance cancer treatment safety. This system ensures prodrug-converting enzymes are only active when needed, minimizing side effects.
Area of Science:
- Biochemistry
- Molecular Biology
- Cancer Therapy
Background:
- Enzyme prodrug therapies offer targeted cancer treatment but face safety concerns due to off-target effects.
- Conditional degradation tags can mitigate these risks by enabling therapy abortion in healthy cells.
Purpose of the Study:
- To introduce and validate Degradation-Directed Enzyme Prodrug Therapy (DDEPT) as a novel safety mechanism.
- To demonstrate the efficacy of traceless shielding (TShld) as a conditional degradation system within DDEPT.
Main Methods:
- Utilized traceless shielding (TShld) to control protein degradation, requiring rapamycin for stabilization.
- Engineered yeast cytosine deaminase as a prodrug-converting enzyme within the DDEPT framework.
- Assessed cell viability under various conditions, including the presence of 5-fluorocytosine (5-FC) and rapamycin.
Main Results:
- TShld rapidly yielded native protein products within 1 hour of rapamycin addition.
- Cell viability was compromised exclusively when both 5-FC and rapamycin were present, indicating conditional enzyme activity.
- Demonstrated successful rescue of yeast cytosine deaminase activity through rapamycin-mediated stabilization.
Conclusions:
- DDEPT, utilizing TShld, provides a robust failsafe mechanism for enzyme prodrug therapies.
- This approach significantly enhances therapeutic safety by controlling enzyme activity and minimizing off-target toxicity.
- The DDEPT system is adaptable and can be integrated with other targeting strategies for improved cancer treatment safety.
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