Massive reshaping of genome-nuclear lamina interactions during oncogene-induced senescence

Christelle Lenain1, Carolyn A de Graaf2,3,4, Ludo Pagie2

  • 1Division of Molecular Oncology and Immunology, The Netherlands Cancer Institute, 1066 CX Amsterdam, The Netherlands.

Genome Research
|September 17, 2017
PubMed

Insights

Oncogene-induced senescence (OIS) alters nuclear lamina interactions, causing cells to lose constitutive lamina-associated domains (cLADs) and gain new gene associations. This suggests novel mechanisms regulating gene expression and genome organization in senescent cells.

Area of Science:

  • Cell Biology
  • Genomics
  • Epigenetics

Background:

  • Cellular senescence irreversibly halts cell proliferation in response to stress, including oncogene activation (Oncogene-Induced Senescence, OIS).
  • Nuclear lamina (NL) organization influences genome structure and is implicated in senescence and aging.
  • Lamina-associated domains (LADs) are genomic regions interacting with the NL, with some being constitutive (cLADs).

Purpose of the Study:

  • To investigate changes in genome-NL interactions during OIS.
  • To understand the role of NL organization in OIS.
  • To identify mechanisms governing LADs and gene repression at the NL in senescence.

Main Methods:

  • Utilized DamID technology to map genome-NL interactions.
  • Employed a model of OIS induced by BRAFV600E oncogene expression.
  • Analyzed changes in cLADs, gene localization, and telomere association with the NL.

Main Results:

  • OIS cells exhibit significant loss of cLADs, indicating a disruption in targeting mechanisms.
  • Multiple genes relocated to the NL in OIS cells but were not repressed, suggesting abrogation of NL repressive activity.
  • Telomeres showed increased association with the NL in senescent cells.

Conclusions:

  • Senescent cells develop a distinct LAD organization.
  • The findings suggest previously unknown mechanisms tether cLADs to the NL and regulate gene expression.
  • OIS profoundly impacts genome organization at the nuclear lamina.

Related Concept Videos

Replicative Cell Senescence02:15

Replicative Cell Senescence

Replicative cell senescence is a property of cells that allows them to divide a finite number of times throughout the organism's lifespan while preventing excessive proliferation. Replicative senescence is associated with the gradual loss of the telomere — short, repetitive DNA sequences found at the end of the chromosomes. Telomeres are bound by a group of proteins to form a protective cap on the ends of chromosomes. Embryonic stem cells express telomerase — an enzyme that adds...
4.5K
Nucleosome Remodeling02:54

Nucleosome Remodeling

Nucleosomes are the basic units of chromatin compaction. Each nucleosome consists of the DNA bound tightly around a histone core, which makes the DNA inaccessible to DNA binding proteins such as DNA polymerase and RNA polymerase. Hence, the fundamental problem is to ensure access to DNA when appropriate, despite the compact and protective chromatin structure.
Nucleosome remodeling complex
Eukaryotic cells have specialized enzymes called ATP-dependent nucleosome remodeling enzymes. These enzymes...
11.3K
Methods of Nuclear Reprogramming01:24

Methods of Nuclear Reprogramming

Nuclear reprogramming is a process of transforming one cell type into an unrelated cell type by epigenetic changes that alter the cell’s original gene expression pattern. Such epigenetic changes force cells to express a different set of genes, which play a significant role in inducing transformation into other cell types. Nuclear reprogramming offers applications in reproductive cloning for livestock propagation and regenerative medicine — developing patient-specific cells for...
2.2K
Restarting Stalled Replication Forks02:37

Restarting Stalled Replication Forks

DNA replication is initiated at sites containing predefined DNA sequences known as origins of replication. DNA is unwound at these sites by the minichromosome maintenance (MCM) helicase and other factors such as Cdc45 and the associated GINS complex.The unwound single strands are protected by replication protein A (RPA) until DNA polymerase starts synthesizing DNA at the 5’ end of the strand in the same direction as the replication fork. To prevent the replication fork from falling apart,...
6.4K
Epigenetic Regulation01:37

Epigenetic Regulation

Epigenetic changes alter the physical structure of the DNA without changing the genetic sequence and often regulate whether genes are turned on or off. This regulation ensures that each cell produces only proteins necessary for its function. For example, proteins that promote bone growth are not produced in muscle cells. Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
X-chromosome...
4.0K
Epigenetic Regulation01:46

Epigenetic Regulation

Epigenetic mechanisms play an essential role in healthy development. Conversely, precisely regulated epigenetic mechanisms are disrupted in diseases like cancer.
34.0K