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Updated: Feb 22, 2026

Isolation and Functional Assessment of Human Breast Cancer Stem Cells from Cell and Tissue Samples
Published on: October 2, 2020
Targeting breast cancer stem cells by novel HDAC3-selective inhibitors
Hao-Yu Hsieh1, Hsiao-Ching Chuang2, Fang-Hsiu Shen3
1School of Pharmacy, College of Medicine, National Taiwan University, Taipei, Taiwan; Division of Medicinal Chemistry and Pharmacognosy, College of Pharmacy, The Ohio State University, Columbus, OH, USA; Institute of Biological Chemistry, Academia Sinica, Taipei, Taiwan.
Abstract:
Although histone deacetylase (HDAC) inhibitors have been known to suppress the cancer stem cell (CSC) population in multiple types of cancer cells, it remains unclear which HDAC isoforms and corresponding mechanisms contribute to this anti-CSC activity. Pursuant to our previous finding that HDAC8 regulates CSCs in triple-negative breast cancer (TNBC) cells by targeting Notch1 stability, we investigated related pathways and found HDAC3 to be mechanistically linked to CSC homeostasis by increasing β-catenin expression through the Akt/GSK3β pathway. Accordingly, we used a pan-HDAC inhibitor, AR-42 (1), as a scaffold to develop HDAC3-selective inhibitors, obtaining the proof-of-concept with 18 and 28. These two derivatives exhibited high potency and isoform selectivity in HDAC3 inhibition. Equally important, they showed in vitro and/or in vivo efficacy in suppressing the CSC subpopulation of TNBC cells via the downregulation of β-catenin.
Insights
Histone deacetylase 3 (HDAC3) inhibition suppresses cancer stem cells (CSCs) in triple-negative breast cancer by reducing β-catenin. Novel HDAC3-selective inhibitors show potential for treating this cancer type.
Area of Science:
- Oncology
- Molecular Biology
- Biochemistry
Background:
- Histone deacetylase (HDAC) inhibitors can reduce cancer stem cell (CSC) populations.
- The specific HDAC isoforms and mechanisms responsible for this effect are not fully understood.
- Previous work implicated HDAC8 in regulating CSCs in triple-negative breast cancer (TNBC).
Purpose of the Study:
- To investigate the role of HDAC3 in CSC homeostasis in TNBC.
- To identify the molecular pathway through which HDAC3 affects CSCs.
- To develop novel HDAC3-selective inhibitors for potential therapeutic use.
Main Methods:
- Investigated HDAC3's role in CSCs using molecular biology techniques.
- Analyzed the Akt/GSK3β pathway and β-catenin expression.
- Synthesized and characterized HDAC3-selective inhibitors based on the AR-42 scaffold.
- Evaluated inhibitor efficacy in vitro and in vivo for CSC suppression.
Main Results:
- HDAC3 was found to increase β-catenin expression, promoting CSC homeostasis via the Akt/GSK3β pathway.
- Two novel compounds, 18 and 28, demonstrated high potency and selectivity for HDAC3 inhibition.
- These compounds effectively suppressed the CSC subpopulation in TNBC cells in vitro and/or in vivo.
- Suppression of CSCs was achieved through the downregulation of β-catenin.
Conclusions:
- HDAC3 plays a critical role in maintaining CSCs in TNBC by regulating β-catenin.
- Targeting HDAC3 with selective inhibitors represents a promising therapeutic strategy for TNBC.
- Developed HDAC3-selective inhibitors show potential for clinical application in suppressing CSCs.
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